RNA id: XM_039798209.1


Basic Information

Item Value
RNA id XM_039798209.1
length 3822
RNA type mRNA
GC content 0.40
exon number 11
gene id LOC120557663
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38857167 ~ 38886428 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAGTAACTGATCCAACGATTCAATGGACAACTATGGAGCTTCTTCTGGatctgctgtgtttgtgtcttctgTGTTTGACCCGAAAAACACTTTGTGATGAAAACAGACCGAAAAACATCACAGTGGAAGGAGGAGCTGATGTAATGTTACCCTGTTCTCTCAGCACCAAGGAGAACACTGAGTTTAAACTCTTTGACTGGAGGAAAGTTGCTCAGAAAGATGATGGTCAGAAGGAGGTGTTCATGTATGATGCAGGCATTCATTACAACAACGGTCGTCCAGGTCAGAGTGAAGAGTTCAAAGGTCgagtttttcattttcaagaTGAACTGAAACACGGCAACGCCTCCATAATCATCAGAAATACAAAGATATCTGACAGTGGAAACTACACCTGTGATTTTCCAAAACTTCAGCCACCTCAAAAATTCTACATTGAGATTGTTGTTGAGCCAAAAGTCATCACAGTGAATGAAGGGAGTGATGTTACTTTACCCTGTTCTCTCAGCACCAAGGAGAACATTACTTCAAAACTGTTTGACTGGACGAAAGTTGCTCAGAAATATGATTGTCAGAAGGATTTGTTCTTTTATAATGGAGGCAGcaataataacaaaaactgTTTTCCAGGTCGAGTCTCATATTTTCCAGATGAACTGAAACACGGCAACGCCTCCATAATCATCAGAAATACACAGGTGACTGACAGTGGAGTCTACACCTGTGATTTTCCAAATCTTCAGCCACCTCAAACATTCTATATTGAGCTTATTGTTGTCGTTGGTGCCGCTTTAAAACCATTTGTTACAATACTTGATGCAACAGCATACTCTGCGCTGCTGCAGTGTGAAGTTCATGGCAATCCCAAACCTAAAGTAGAGCTGCGGAACAGGGCTGGAAACATCCTTCATGCTAAAGTAACACAAGACTCAGAAAGAGAAGGCAGCTTCTACATCACCCTCCAAACTAAAGTGACCAAGACCGGCACCTATCGCTGTGTAGCCACACAGGAGgaaatcaaacatcagatttatgCTGAGACCTCTGTGTATATCAGTGGGTTCAGTGGATGGATTGCTGCTGCAGTTATTGgtgttctttttcttgttgCTGGTGTTATTCTAGCTGTGCTTTTATACAGGCGTAAAAAAGAGCCAAAACTCATCACAGTGGAAGAAGGCAGTGATGTTATTTTACCCTGTTCCGTCTGGCCCGAGAAGAACCTTCGGTCAACAAAGTTTGTCTGGAAGAAAACTGATGATAATGTGTTCCTGTATGATAATGGCGAGCATCCAGGTCAGAGTGAGCAGTTCAAAGGTCGAGTCTCACATTTTCCAGATGAACTGGAACAAGGCAACGCCTCCATAATCATCAGCAATACAACGAGGGCTGACAGTGGAGAATACAGATGTATTATTCCACTAATtcataaacaacaaaaattccaaattaatgttgttgttgGGACAGAAGTCATCAAAGTGGAAGAAGGCAGTGATGTTACTTTACCCTGTTCCCTCTGGCCCAAGGAGGACATTCGGTTAACACAGTTTAACTGGAAGAAAATGCCTCAGAATGATGAAAGTCAGATGGAGGTGTTCCTGTATGATAAAGAGCCAAAACTCATCACAGTGGAAGAAGGCAGTGATGTTACTTTACCCTGTTCTCTCTGGCCCAAGGAGGACATTCGGTCAACACGGTTTGTCTGGCGTAAAAATTATGATGGTCAGATGGTGTTCCTGTATGATAAAGATGATCTTTACAGTGACGAGCGTCCAAGTTGCAAGTTCCAAGGTCGAGTCTCACATTTTCCAGATAAACTGGAACAAGGCAACGCCTCCATAATCATCAGAAATACGACGAGGGCTGACAGTGGAGACTACAGATGTAGTTTTCCAAAAATTCGGAAACCTAAAAAATTCCACATTAAGCTTATTGTTGGGCCAAAAGTCATCAAAGTGGAAGAAGGCGGTGATGTTATTTTACCCTGTTCCCTCTGGCCCAAGAAGGATCTTCGGTCAACACAGTTTATCTGGAAGAAAGTTTCCGAGAAAACTGATGATGGTCAGAAGGTGTTCCTGTATGATAAAGGTGATCTTTACAGTGACGAGCATCCAGGTCAGAGTGAGCAGTTCAAAGGTCGAGTCTCACTTTTTCCAGATAAACTGAAACAAGGCAACGCCTCCATAATCATCAGAAATGCAATGAGGGCTGACAGTGGAGACTACAGATGTTATTTTCCATCAATTCAAAGACCTCAAATGTTCTACATTAAGCTTGATGTTGAGCCAACAGTCATCACAGCGGAAGAAGGCAGTGATGTTACTTTACCCTGTTCCCTCTGGCCCAAGGAGGACATTCAGTTAACACGGTTTATCTGGAAGAAAGTTTCCCAGAAAACCGATGATGTTCAGAATGTGTTCCTGTATGATAAAGGTGATCTTTACAGTGACGAGCGTCCAGATCAAAGTGAGCAGTTCAAAGGTCGAGTCTCACATTTTCCAGATGAACTGAAACAAGGCAACGCCTCCATAATCATCAGAAATACGACGAGGGCTGACAGTGGAGACTACATCTGTATTGTTCCATCAATTCAGAAACCTAAAACAATCCACATTAAGCTTGTTGTTGctTCAACTCCAGAGTCAGATGAACATCATCCATTAATGAATGGAATGGATGGAATCGAACTTCATTCATTAATGATAGAAAGGCTTTGATAATGTCTGTGTTGCTGGAAACATTTCTttagttttcagttattttatgCTTGTGTTATATCACAATTAATAGGCTCATTGATTTTGTCGTGCAGTTCTAGTTGATTGTGTAACTGTTTGTAAGACTTGTACAGTATTCCTGTTCCAGAGGTGTGTAGAGCAGAGAGGACCAGGTCAACATGATGATGCTCTTATAAGTcttgtatttttatattcagACCAAATTACAAAGTTAACTGTGATGATGTGGAGTGTGAAATATTGTGCAaataaatgtcattttatttattttttaaatatattttaccattttatattgtattttgttACATGTCTTTGCTCTTCAGACAACCATTGGTTGCTTCTGTATTTAAAAGAATGGTTAAAGGGCAACtcttatatagcattttcaggttcatacttgtattttgcgTTTGTACTTGTATCACTATATGAAGCTTGAGCTACTGCAacggagtatatagcaggactttgaTTATTTAAATCACCAACagaggcttctaaaccaaatgttacacaaccggttggaaatctgaaccttttagctcacagggattttGTTTAAAGTATGTTTCTCATTATTTGATgttttggccacgtttaacatgaaaatcctaCATTATAACATCATatatgtgacaaaaaacatgaaaatgaatAATATGTCCTTTTTTAAGGCTTATatgtggtattgatcttcttatctaactcaGTGAGAAAGTGAATAAAGTGCCCTGGGGGGTCACCGGGTAGAGCCGGTACTTTAGGCCGAGTCATCACCACGGTGACTTTGGTTTGGTCCGTCAcagggccctttgctgcatgtcataccctctctctcctctgtatcTTTTAAAAcgagaaatgcccaaaaatgtatcctaaaaaaaacccaaaatgattaactgtaatgtatttttacttttatatgaCAAGACAAAGTCTGTACCGTACATCTTACTGTGTTCTTGCACTTGTTTGTTGTTAAGCGATAATATAGTGCCTGTATGTAATTTCaatttaaatgtattcaaaCTTTACTATTGAAAATCTTGAATTAAAAGTCAATATTGATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59589 lncRNA upstream 15934 38841034 ~ 38841233 (+) True G44489
TU59588 lncRNA upstream 32148 38824675 ~ 38825019 (+) True G44488
XR_005638998.1 lncRNA upstream 43723 38806446 ~ 38813444 (+) True LOC120557691
TU59576 lncRNA upstream 44537 38806469 ~ 38812630 (+) False LOC120557691
TU59542 lncRNA upstream 143344 38709982 ~ 38713823 (+) True G44454
TU59600 lncRNA downstream 101640 38988068 ~ 38988533 (+) True G44499
XR_005639003.1 lncRNA downstream 213557 39099985 ~ 39100496 (+) True LOC120557696
XR_005639001.1 lncRNA downstream 317241 39203669 ~ 39205218 (+) True LOC120557694
TU59633 lncRNA downstream 612671 39499099 ~ 39865513 (+) True G44527
XR_005639000.1 lncRNA downstream 722293 39608721 ~ 39610204 (+) True LOC120557693
XM_039798639.1 mRNA upstream 73109 38734167 ~ 38784058 (+) False rbpjl
XM_039798640.1 mRNA upstream 73109 38734191 ~ 38784058 (+) False rbpjl
XM_039798641.1 mRNA upstream 73109 38746631 ~ 38784058 (+) True rbpjl
XM_039798642.1 mRNA upstream 73109 38756133 ~ 38784058 (+) False rbpjl
XM_039798178.1 mRNA upstream 447893 38366059 ~ 38409274 (+) True LOC120557646
XM_039798228.1 mRNA downstream 10932 38897360 ~ 38913530 (+) False LOC120557676
XM_039798226.1 mRNA downstream 10933 38897361 ~ 38913530 (+) True LOC120557676
XM_039798213.1 mRNA downstream 14144 38900572 ~ 38903056 (+) False LOC120557667
XM_039797149.1 mRNA downstream 55144 38941572 ~ 38942817 (+) True LOC120557116
XM_039798231.1 mRNA downstream 58979 38945407 ~ 38947850 (+) True LOC120557678
TU59524 other upstream 244196 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 689949 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2894557 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 3191126 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 3370932 35463772 ~ 35486235 (+) True LOC120556915
XR_005638991.1 other downstream 14144 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 66690 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 927532 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1269780 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 1594248 40480676 ~ 40506570 (+) True G44690

Expression Profile