RNA id: XM_039798216.1


Basic Information

Item Value
RNA id XM_039798216.1
length 1707
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC120557670
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38953118 ~ 38981733 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAAAAGGGCACAAGCCCTGAACTATCCCCCATGCACAAGACAAACTAACTAAAGTGATGTTTGATCTTTAGGAGACATCGACAGCGATGgagcttcttcctcttctgtgtctctgcctcCTGACTCGCTCTGGAATCACGTCTGCTCAACAAAATGGGCCAGCAGTCATCAAAGTAGAAGGAGGGGCTGATGTTGTGTTACCCTGCTCTCTCAGCACCAAGGAGAACATTGAGTTTAAACTCTTTGACTGGAAGAAAGTTGCTCAGAAAGATGATGGTCTGAAGGAGGTGTTCCTGTATAACGGAGGCATTCATTACAACAACGGCCGAGGTGGTCAGAGTGAAGAGTTCAAAGGTCGAGTCTCTCATTTTCAAGATGAACTGAAACATGGCAACGCCTCCATAATCATCAGAAATACAAAGATATCTGACAGTGGAAACTACACCTGTGATTTTCCAAATCTTCAGCCACGTAAAACATTCTACATTGAGCTTGTTGTTGATCCTGTCTTAAAAGACAGAACAGGGGAAAACATCCGAGCTCCAAAACCATTTTTCAGAATACGTAAAACTGAAGATGGAGTGCTGCTGCAGTGTAAAGTTCATGGCTCTCCAAAACCTAAAGTAGAGTGGCAGGACAGTGCTGGAAAGATCCTTCCTGCTGAGGAGCCCCAAGTCTCAGAGAGAGGAGGCCGTTTCTACATCACTCTCACCACTACTGTGACCAGGGCTGACTTCTATCTCTGTGTAGCCACTCAGAAGACAATCCGCCATCAGATTTCTACAAGGATTTATGTCAATGCGTACAGCTCTGGACCGCAGACACATCCTTCAGATCAAAACTTGAGGAAAGTGATGATTGGAGTTGCTGTTGGCGTTCTCGCACCACAGAGCCAGGTTCATTGTGAGACAAAAGTGACCCGGCAGAAAAGGAGCCAGAGCCCCAATCAACACCAACTTTAAAGTTCTCTGCAGATGTGTGTGGTATTGTACGTCTTTTGTAGCGAGGACTGCTTTGAATTTTAGAACAAAAGAGTGAGGACATTTTTGGAGATTGAGGACATTTTCTCTTCAACTTCTTAAAAGGTCAGTTTGAGAGTTAAAACCTAGAATTGGCCTTTGTATTGTATAACTTTTCAAAATTCTGAGTTTTGTGACTAGTGataatgttaaaaaagcaaTTACTCCCACATACTCCACACATATTGCCTACTAAGACTGGGCGGTATATTGACTTTTCACAAGATGTGGAATGAGAATTTATTGATATGTTGAGTATATATTGATATAGTGTTACATATCACATGTCACATATCGTTTAATCCAAAAGAGTCTCAGCTTTCCAGCCAGAAGTCAGTGTGcagaaatatacaaatacaCCATTTTAggtgaaaatataaaaaatgtatactgCATGAGAAAAACTGCATGGCATTATCATCAAATAGGAGTGTCTGTAAAGGGGAGACCTGTCGGTACCCATAGaacccattttcattcagacatcttgaggtcagaggtcaagggATCCCTTTGAAAATGGCCATGGCAGTTTTTCCCCTCGCCAAAATGTAACCTAACTTTGGAGCGTTATTTAGCCACCTTCTCTACGAGCAGAGATggtaaaagtactcacttcccgtactcaagtagaagtacagatacttgtgttaaaaaatactctggtaaaagtagaaatactgATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59589 lncRNA upstream 111885 38841034 ~ 38841233 (+) True G44489
TU59588 lncRNA upstream 128099 38824675 ~ 38825019 (+) True G44488
XR_005638998.1 lncRNA upstream 139674 38806446 ~ 38813444 (+) True LOC120557691
TU59576 lncRNA upstream 140488 38806469 ~ 38812630 (+) False LOC120557691
TU59542 lncRNA upstream 239295 38709982 ~ 38713823 (+) True G44454
TU59600 lncRNA downstream 7956 38988068 ~ 38988533 (+) True G44499
XR_005639003.1 lncRNA downstream 119873 39099985 ~ 39100496 (+) True LOC120557696
XR_005639001.1 lncRNA downstream 223557 39203669 ~ 39205218 (+) True LOC120557694
TU59633 lncRNA downstream 518987 39499099 ~ 39865513 (+) True G44527
XR_005639000.1 lncRNA downstream 628609 39608721 ~ 39610204 (+) True LOC120557693
XM_039798231.1 mRNA upstream 5268 38945407 ~ 38947850 (+) True LOC120557678
XM_039797149.1 mRNA upstream 10301 38941572 ~ 38942817 (+) True LOC120557116
XM_039798228.1 mRNA upstream 39588 38897360 ~ 38913530 (+) False LOC120557676
XM_039798239.1 mRNA downstream 142676 39122788 ~ 39142350 (+) True LOC120557683
XM_039798211.1 mRNA downstream 269054 39249166 ~ 39276979 (+) True LOC120557665
XM_039797151.1 mRNA downstream 314525 39294637 ~ 39313682 (+) True LOC120557118
XM_039798233.1 mRNA downstream 767061 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA downstream 767061 39747173 ~ 39774250 (+) False LOC120557680
XR_005638991.1 other upstream 50062 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 340147 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 785900 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2990508 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 3287077 35664143 ~ 35666041 (+) True G43924
TU59701 other downstream 833848 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1176096 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 1500564 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 1524240 40504352 ~ 40506056 (+) False LOC120557692
XR_005638993.1 other downstream 1539830 40519942 ~ 40541231 (+) False LOC120557674

Expression Profile