RNA id: XM_039798225.1


Basic Information

Item Value
RNA id XM_039798225.1
length 1346
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120557675
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40645188 ~ 40647514 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGCAGGAGAATCTCGAGTGGGAAGAATTCTCAAAGAGGTACACCAGCCGTATAATGAGCTGCGTCGCCAAGGAGCACGTAATCTGAATCCAGTTCCTTACCACGCTGAGTATATGGGCCATAAACTCCACCTAGACCAGAATGAGAAGCTGGGAATGTTTGGAGTGACGCATGTCTTGGCTATTGATGGATTCAGCAGCAAAATTGTTGCTGAATCCACAATGCCAGTGAAAAACAACCTTGTTATTTATGAGGAAGTTTACAGGAAAGCAGTTGTCCAAAACGGCATGTGGGACCAAATCCGAGTGGATCATGGCAGGGAGTTTTACTTGACCCTGTACATGCAAGAAAAGCTGTCTCAACACAGACGTAACATCAACAGGCTACCTTATGTACAGACAACTTCTTCAAGGAACCTTCGTGTGGAAAGAATTTGGCCAGAGGTCAACAATCGGGTGAACTATCCAATAAAACAGGCCCTGGTTCACCTGCTGGATCAAGAGCTGCTCGACATCCAGGATAATATAACCAAATTTTGTGTCTCCAACCTGGCATGTCAAGTGAGTCAGATTGGACTTGCCAGGGTTGTGCAGTCCTGGAATGCCCATAGGATACCAGGCAGAGGGATACCAAACCAACTTGCAGCTAATTGTTGTCCAGCAAGAATTCCCACAGAGCTGTTGCCCAACGCCGCCGAGGCAGCACACATGTATGAGCAGGAGTTGGGGTCCTCCCTGACTTGGGTATCTGCCTTTGgctctgacccattttcatcaGAGCAAGACCGATGTCGTGCTGAGCAGCTGTTTGGAGAGAGGTTTCCAGACATGTCTCTTCTTTTTGGAAAAGTGGTTAACAATGACCATAGTGTGTTTCAGGAGGCACTGTTCTATCTGATCAATGTAACTGAAAGACATGCAAGATAAATACAGTTGGGGGTATCTCATACTAGGCCAGTGGTAGACTAGGTACACAAAAAGTACTGTGTGGTTATATTTGTCACATTTCTAAAGCTAGAACCTTAAGATGTTTTTACatgaaaaatgccttcacgCCAATTAATATATCAATTGACTTATTGATTAATCAACTTGTTcttttcagctgtacttgtgtAAAACTGCTAATTTATAACATGAAATTGTACTAAATTTGTGAGCCGTcaaattaatgtagtggagtaaaagtagaaTATTTCCTCTGAGATTTAGTGGAGaagtaaaaagtcatgaaaagaaaatactcaagtatCTCAACTTTCCACCAATGAACTATGCATATGTTTGTACAGTAGTTGTGAGAAACTGATTTAAGCTCAGTTGTAGATGAATAAATTCCAAGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59768 lncRNA upstream 17877 40443873 ~ 40627311 (+) True G44634
XR_005639006.1 lncRNA upstream 35624 40601428 ~ 40609564 (+) True LOC120557699
TU59771 lncRNA upstream 42151 40602563 ~ 40603037 (+) True G44637
TU59764 lncRNA upstream 97340 40537311 ~ 40547848 (+) True LOC120557674
TU59749 lncRNA upstream 99813 40431541 ~ 40545375 (+) True G44621
XR_005639007.1 lncRNA downstream 8345 40655859 ~ 40656646 (+) True LOC120557700
TU59754 lncRNA downstream 51546 40699060 ~ 40719215 (+) True G44622
TU59859 lncRNA downstream 66167 40713681 ~ 40933867 (+) False G44711
TU59861 lncRNA downstream 66167 40713681 ~ 40934131 (+) True G44711
TU59762 lncRNA downstream 69287 40716801 ~ 40775058 (+) True LOC120557697
XM_039797160.1 mRNA upstream 61483 40554950 ~ 40583705 (+) True LOC120557127
XM_039798224.1 mRNA upstream 103957 40519942 ~ 40541231 (+) False LOC120557674
XM_039797157.1 mRNA upstream 198542 39791011 ~ 40446646 (+) True LOC120557124
XM_039798212.1 mRNA upstream 213847 40156219 ~ 40431341 (+) True LOC120557666
XM_039798233.1 mRNA upstream 870938 39747173 ~ 39774250 (+) True LOC120557680
XM_039798243.1 mRNA downstream 19338 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 37308 40684822 ~ 40716121 (+) True LOC120557684
XM_039798235.1 mRNA downstream 74182 40721696 ~ 40734477 (+) True LOC120557681
XM_039798237.1 mRNA downstream 74182 40721696 ~ 40734477 (+) False LOC120557681
XM_039798229.1 mRNA downstream 91377 40738891 ~ 40798049 (+) True LOC120557677
XR_005638993.1 other upstream 103957 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 138618 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 139132 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 481578 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 823280 39813960 ~ 39821908 (+) False G44581
XR_005638994.1 other downstream 18685 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1103489 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1222216 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1249508 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1258015 41905529 ~ 41912086 (+) True map1lc3a

Expression Profile