RNA id: XM_039798237.1


Basic Information

Item Value
RNA id XM_039798237.1
length 750
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC120557681
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40721696 ~ 40734477 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGCATTAGTACCCATTAGGAGTGGCTCCATCCTTGTTATTCGAGACGTTGTGATGTTAAAGTGATGTTTGTCCATTAGGAGACATCGACAGCGATGgagcttcttcctcttctgtgtctctgcctcCTGACTCGCTCTGGAATCACGTCTGCTCAACTAAACGGAGCAGCTCCAGAGCCATCTGTCAAGGTACTTAATCCAACAAACCACTCAGCGCTGCTGCAGTGTGAGGTTCAAGATGCTTCTCCAGACCTTAAAGTAGAGCTGCAGGACAGTGCTGGAAACACACTTCCTGCTGAGGGGCCCCAGGTCTCAGAAAGAGGAGACAGATACTACATCACCCTCCAAACTACTGTGTTCAAGACCGACAACTTCAGCTGTGTCGTCACACAGGAGGGAACCAACCAACAGATTTATGCTCAGACCTTTGTGCATATCAGTGGGGCAGCTTCAGCGGCAGACTCCTCAGACGAAGACTCAGAAGGACAAATGAGTCCACGAAAGGGTCTAAGCGGGAGTTCTTTTGGAAGGCCAGgTGACGGAGCAGTGCCAACCTCAGAGTCTCCCAATGGATGGCTTGTTGCTGCAATTCTTCTCCCAgtttttcttgttcttcttctagCTGTGCTTGTATACAAGTGTTGCACcctaaaatgtacaaaaaGAGCACTAGGAGTGCAAGTCCCAACTAGTGATGTACCTGCCTGATGACCTGAGAGGCCTGATGACAATGATCAATGACAACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59754 lncRNA upstream 2481 40699060 ~ 40719215 (+) True G44622
XR_005639007.1 lncRNA upstream 65050 40655859 ~ 40656646 (+) True LOC120557700
XR_005639006.1 lncRNA upstream 112132 40601428 ~ 40609564 (+) True LOC120557699
TU59771 lncRNA upstream 118659 40602563 ~ 40603037 (+) True G44637
TU59764 lncRNA upstream 173848 40537311 ~ 40547848 (+) True LOC120557674
TU59864 lncRNA downstream 2799 40737276 ~ 40755203 (+) True G44713
TU59766 lncRNA downstream 4433 40738910 ~ 40783812 (+) True G44632
XR_005639005.1 lncRNA downstream 25332 40759809 ~ 40772434 (+) True LOC120557698
XR_005639004.1 lncRNA downstream 38552 40773029 ~ 40774307 (+) False LOC120557697
TU59882 lncRNA downstream 92943 40827420 ~ 40867607 (+) True G44731
XM_039798240.1 mRNA upstream 5575 40684822 ~ 40716121 (+) True LOC120557684
XM_039798243.1 mRNA upstream 52954 40666852 ~ 40668742 (+) True LOC120557687
XM_039798225.1 mRNA upstream 74182 40645188 ~ 40647514 (+) True LOC120557675
XM_039797160.1 mRNA upstream 137991 40554950 ~ 40583705 (+) True LOC120557127
XM_039798224.1 mRNA upstream 180465 40519942 ~ 40541231 (+) False LOC120557674
XM_039798229.1 mRNA downstream 4414 40738891 ~ 40798049 (+) True LOC120557677
XM_039798230.1 mRNA downstream 4417 40738894 ~ 40788646 (+) False LOC120557677
XM_039796295.1 mRNA downstream 72751 40807228 ~ 40821097 (+) True LOC120556655
XM_039797509.1 mRNA downstream 138372 40872849 ~ 40914254 (+) True LOC120557310
XM_039797511.1 mRNA downstream 138372 40872849 ~ 40914254 (+) False LOC120557310
XR_005638994.1 other upstream 54190 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 180465 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 215126 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 215640 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 558086 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 1016526 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1135253 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1162545 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1171052 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 1171130 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile