RNA id: XR_005638994.1


Basic Information

Item Value
RNA id XR_005638994.1
length 639
RNA type transcript
GC content 0.43
exon number 2
gene id LOC120557687
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40666199 ~ 40668742 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTATTTTTACCCTGTTCACTCAGCACCATTGTGGACATTCGGTCAACACGGTTTATCTGGCAGAAAACTGATGATGGTCAGATGGTGTTCCTGTATGATAAAGGTGATCTTTACAGTGACGAAGTCCAGGTCAGAGTGAACAGTTCAAAGATCGAGTCTCACATTTTTCAGATGAACTGGAACAAGGCAACGGCTCCATAACCATCAGAAATATGGACGAGGGCTGACAGTGGAGAATACAGATGTGATTTTCCATTCATTCAGAAACCTCAAATGTTCTACTTTAAGCTTCTTGTTGAACCAAAACTCATCACAGTGAGAGAAGGCAGTGATGTTACTTTACCCTGTTCCCTCTGGCACCAGGAGGACATTACGTCAACACAGTTTATCTGGCAGAAAGTTTCCCGGACAACTGATAATGGTCAGAAGGTGTTCCTGTATGATAATGGTGATCTTTACAGTGAGAAGCGTCCAGGTCAGAGTGAGCAGTTCAATGGTCGAGTCTCACATTTTCCAGATGGACTGGAACAAGGCAACGCCTCCATAACCATCAGAAATATGACGAACGCTGACAGTGGATACTACAGATGTGATTTTCCATTAATTCAGAAACGTCAAGAATTCCACTTTAAGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639007.1 lncRNA upstream 9553 40655859 ~ 40656646 (+) True LOC120557700
TU59768 lncRNA upstream 38888 40443873 ~ 40627311 (+) True G44634
XR_005639006.1 lncRNA upstream 56635 40601428 ~ 40609564 (+) True LOC120557699
TU59771 lncRNA upstream 63162 40602563 ~ 40603037 (+) True G44637
TU59764 lncRNA upstream 118351 40537311 ~ 40547848 (+) True LOC120557674
TU59754 lncRNA downstream 31554 40699060 ~ 40719215 (+) True G44622
TU59859 lncRNA downstream 46175 40713681 ~ 40933867 (+) False G44711
TU59861 lncRNA downstream 46175 40713681 ~ 40934131 (+) True G44711
TU59762 lncRNA downstream 49295 40716801 ~ 40775058 (+) True LOC120557697
TU59862 lncRNA downstream 61644 40729150 ~ 40794798 (+) True G44712
XM_039798225.1 mRNA upstream 18685 40645188 ~ 40647514 (+) True LOC120557675
XM_039797160.1 mRNA upstream 82494 40554950 ~ 40583705 (+) True LOC120557127
XM_039798224.1 mRNA upstream 124968 40519942 ~ 40541231 (+) False LOC120557674
XM_039797157.1 mRNA upstream 219553 39791011 ~ 40446646 (+) True LOC120557124
XM_039798212.1 mRNA upstream 234858 40156219 ~ 40431341 (+) True LOC120557666
XM_039798240.1 mRNA downstream 17316 40684822 ~ 40716121 (+) True LOC120557684
XM_039798235.1 mRNA downstream 54190 40721696 ~ 40734477 (+) True LOC120557681
XM_039798237.1 mRNA downstream 54190 40721696 ~ 40734477 (+) False LOC120557681
XM_039798229.1 mRNA downstream 71385 40738891 ~ 40798049 (+) True LOC120557677
XM_039798230.1 mRNA downstream 71388 40738894 ~ 40788646 (+) False LOC120557677
XR_005638993.1 other upstream 124968 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 159629 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 160143 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 502589 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 844291 39813960 ~ 39821908 (+) False G44581
TU60455 other downstream 1083497 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1202224 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1229516 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1238023 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 1238101 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile