RNA id: XM_039798259.1


Basic Information

Item Value
RNA id XM_039798259.1
length 3750
RNA type mRNA
GC content 0.52
exon number 24
gene id slc4a8
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15318249 ~ 15349263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGCCGGGAAATCATCACAACAccggaggggtggggggggggacaaaattatctttttcaCCTTTTTCCTCATCTGGAAGAGATGTCTACACTCACCATGTCTGTGGAATCAGAAGCAGCTGCTGTTACCAACTCGTGACTGCTTCTTTAGGCTACGTCCTAAGACAGCGCTGAGAGGCTGATTAGCCCCCCCCAGGACTGGTGGAACTCACCTGAACACCCCGAAACACTGAGCAGGTTAACCCAAAGTCCACGAGCATGCCCGGCGACGACCCCGAGAGCATGCTGAGCTACCAGaGGCCAGATGAGGAGGTGGTGGTAGACCAGGGAGGGACCAGCTCAGTACTGAACATCCATTATGAAAAGGAGGAACTAGAAGGCCACAGGACTCTGTTTGTGGGGGTTCGGATGCCCAGGCAGAGCCATCGTCACCACAAGGCCCACGGCTCTCGGCACCgcaagagagacagaagggCAGGAAGCATCGCAACGCAACAGAGCGAGGATAGTGAGACGGCCACCTCCAGTCATGACACGCCGTCCCAGCGGGTCCAGTTCATTCTGGGCACAGAGGAGGATGCTGAACATGTGGCCCACGAGCTGTTCACTGAGCTGGATGAGATCTGTGTGAGGGATGGCAAGGATGCTGAGTGGAAGGAAACAGCCAGGTGGCTGAAGTTTGAGGAAGACGTGGAGGATGGCGGGGAGAGGTGGAGCAAGCCCTATGTCGCTACTCTCTCCCTCCACAGCCTGTTTGAGCTCCGCAGTTGCATCATCAATGGCAGTGTGTTGCTTGACATGCACGCTGACAGCATCGAAGAGATTGCAGACATGGTGCTGGACCACCAGGAGGCGTCCAATGAGCTGGACGACACTGTGAGAGTGAAGGTGCGCGAGGCTCTGCTGAAGAGACACCACCACCAGaacgagaagaagaagaacctGATGCCCATGGTGCGCTCCATCGCTGAGGGAACCCGCAAACAGTCAGATCTCCATCTGACAGCAGGGTCAGCCACATCTCCCCAGCCTCCGCCAACTACAGAACCCGCTAAAAACGGTGGCGGACAGGACAGCACCCCAGTGGACCTTAGCAAGGTGGACATGCACTTCATGAAGAAGATCCCAGAGGGTGCAGAGGCCTCCAATGTACTGGTGGGAGAACTGGACTTCCTGGAGAGGCCCATTGTGGCCTTTGTCCGCCTCTCCCCTGCTGTGCTGCTCACCGGACTCACTGAGGTCCCCATACCTACCAGGTTCCTCTTCATTCTGCTGGGCCCTGATGGAAAGGCTCAGCAATACCATGAAATTGGACGCTCCATGGCGACCATCATGACAGATGAAATCTTCCATGATGTAGCCTACAAGGCAAAGGACAGAAGTGACCTGCTGGCTGGGATAGATGAATTTCTGGACCAGGTGACGGTCTTGCCACCAGGAGAGTGGGACCCCTCCATCCGCATCGAGCCACCAAAGAGTGTCCCCTCTCAGGAGAAGAGAAAGATGCCAGGAGTCCCTAATGGCGGAACCTTCCAGGTAGAGGAAGAACTACATGCTGAGCACCACGGGCCAGAGCTACAGAGAACTGGAAGGTTGTTTGGTGGTCTGATACTGGACATTAAGAGGAAAGCTCCGTTCTATCTGAGTGACTTTAAGGACGGTCTGAGCCTCCAGTGTGTGgcctctttcctcttcctctactgTGCCTGCATGTCTCCTGTCATCACCTTTGGAGGACTGCTGGGGGAGGCGACAGAGGGAAGCATCAGTGCCATAGAGTCCTTACTCGGTGCGTCTATGACTGGAGTAGCCTACTCTCTGTTTGCTGGTCAGCCTCTTACCATTCTAGGCAGCACAGGTCCTGTGTTGGTTTTTGAGAAAATCCTCTTCAAGTTCTGCAAGGACTACAACCTGTCCTATCTGTCGCTGAGGACTTGCATCGGCCTGTGGACGGCCCTGCTGTGTTTGGTGTTGGTTGCCACTGATGCTAGCTCTCTGGTGTGCTACATCACTCGGTTCACAGAGGAGGCCTTTGCCGCCCTCATCTGCCTCATCTTCATCTATGAGGCCTTGGAGAAGCTCTTCCACTTGGGAGAAGTCTACCCCTTCAATGCACACAGCGATCTGGATAAACTCACACTGGCGTActgtAGGTGTACAGAGCCAGATAACCCCAGTAATAAAACCTTAGAACTGTGGAGTGAGAGAAACATTACAGCCTCTGTTGTACCATGGACCAACCTTACTGTCAAGGAGTGTGTCAGTCTGCAGGGCCACTTTGTTGGGACAGCATGTGGCCACCACGGCCCCTACACCCCAGATGTTCTCTTCTGGTCTACCATCTTGTTCTTCTCGACCTTTTTAATGTCTGCCTTCCTTAAACAATTCAAGACAAGTCGTTATTTCCCCACCAAGGTGCGGTCCATGATCAGTGACTTTGCAGTGTTCCTTACTATTGCTGTCATGGTTCTGCTTGATTATGCGATGGGAGTGCCCTCCCAGAAGTTAAAGGTGCCCAGCAAATTCCAGCCTACCAGAGACGACAGAGGTTGGCTGATCAATCCAATAGGACGCAACCCATGGTGGACAGTCCTGGCTGCAACTATTCCTGCTCTTCTCTGCACCATCCTCATCTTTATGGACCAACAGATAACTGCCGTCATCATCAACCGCAAAGAGCACAAACTACTGAAGGGCTGTGGGTACCACTTGGACCTGCTCATGGTTGGGGTGATGCTGGCGGTGTGCTCCATCATGGGCTTGCCCTGGTTCGTAGCAGCCACGGTGCTGTCCATCTCTCACGTCAACAGCCTGAAGCTGGAGTCAGAGAGCTCGGCTCCAGGAGAACAGCCTCGCTTCCTGGGCATCAGAGAACAGAGGTTAACTGGTCTGCTCATCTTCCTGCTCATGGGCTGCTCTGTATTCATGACTGGAGCCCTGCAGTTCATTCCTATGCCAGTGCTGTATGGTGTTTTCCTTTACATGGGAGTCTCCTCATTAAAAGGCATCCAGTTCTTTGACCGTGTAAAGTTGTTCTGTATGCCGGCGAAGCACCAGCCAGACTTCATCTACCTGCGCCACGTCCCCTTGAGGAAGGTGCACTTGTTCACTGTCACGCAGCTCACCTGTCTGGCGCTGCTCTGGGTCATCAAGCACTCACCTGCTGCCATCGTCTTTCCCATGATGGTGCTGGCTTTGGTTTTCATTCGCAAACTGCTGGACTGGTGTTTCTCCAAGCGAGAGCTAAGTTACCTGGATGATTTGATGCCtgagtggaagaaaaaaaaccttgatGATGCATCTAAAACGATAGAAGAGGAATCACAGGTTATGCTCAGCACAAAGAAGAAAGATGCAACTGCTGTTCAGATTCCCATGGAGGCCAGCGAGCCTGTTCAGACCCCCAAAGCACACGACCCCAGGATTGAAGGGATCACATTCATAGACGAGTGAAAGGATGTCCACAGTCCTGACAGGCTGTAGTTCTGGACCACAGGATACTGCGATTTGGCTGATTTCAACCACTTCAGTGCTTAGAAAAACAAGTCTCGATGATTTCTACCAGCTACCTGCAACACATAATACCGTCCACAAAAATAAAGAGAAGGTAGTACAGTACGCACAGATAGACATACACATGCACTTCAATCTTTGTGAGAACtagaaatatctttaaaatcttATTTACCtacatttaaaggtgccctgccacacgtatttcattactttgtctgaagttctaccatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51940 lncRNA upstream 67316 15250569 ~ 15250933 (+) True G38670
TU51769 lncRNA upstream 341345 14969673 ~ 14976904 (+) False G38538
TU51770 lncRNA upstream 345952 14915678 ~ 14972297 (+) True G38538
TU51749 lncRNA upstream 454142 14863322 ~ 14864107 (+) True G38526
TU51712 lncRNA upstream 461180 14806648 ~ 14857069 (+) False znf740a
TU52021 lncRNA downstream 47466 15396729 ~ 15397507 (+) True G38738
TU52045 lncRNA downstream 113038 15462301 ~ 15463452 (+) True G38762
TU52079 lncRNA downstream 192990 15542253 ~ 15543372 (+) True G38788
TU52129 lncRNA downstream 277048 15626311 ~ 15626840 (+) True G38829
TU52133 lncRNA downstream 294798 15644061 ~ 15644399 (+) True G38832
XM_039798751.1 mRNA upstream 11647 15302830 ~ 15306602 (+) True LOC120557984
XM_039798743.1 mRNA upstream 19765 15214670 ~ 15298484 (+) False LOC120557980
XM_039796289.1 mRNA downstream 10400 15359663 ~ 15375612 (+) True si:dkey-195m11.8
XM_039796279.1 mRNA downstream 103930 15453193 ~ 15455490 (+) True LOC120556644
XM_039796278.1 mRNA downstream 106344 15455607 ~ 15456964 (+) True LOC120556642
XM_039796349.1 mRNA downstream 257419 15606682 ~ 15626045 (+) True LOC120556683
XM_039796350.1 mRNA downstream 257419 15606682 ~ 15626045 (+) False LOC120556683
XR_005638919.1 other upstream 443790 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 501813 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 980489 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1084724 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1789930 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 296248 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 616151 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 700642 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1083975 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 1168273 16517536 ~ 16543580 (+) True G39116

Expression Profile