RNA id: TCONS_00008691


Basic Information

Item Value
RNA id TCONS_00008691
length 213
lncRNA type sense_over
GC content 0.57
exon number 2
gene id XLOC_003708
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43035558 ~ 43048021 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttaatcgCAGGGCTTGTTTGGCCCATGAGGAAGTGTGAGCGGTGAACAGGCCAGAGGTCAGGATGACGACAGTAGCCGCAGAGTTCGAGCACATGGACATCCAGCAGCAGTACCAGGACAGTGTGAACAACCGCTGGGACGACGAGTGGGACAATGAGAACAGCTCCGCACGACTGTTCGAGCGCTCGCGCATCAAAGCACTCGCAGGTCA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008688 lncRNA upstream 152260 42839854 ~ 42883298 (+) False XLOC_003707
TCONS_00008687 lncRNA upstream 190610 42839850 ~ 42844948 (+) False XLOC_003707
TCONS_00008690 lncRNA upstream 190610 42839866 ~ 42844948 (+) False XLOC_003707
TCONS_00008689 lncRNA upstream 194050 42839856 ~ 42841508 (+) False XLOC_003707
TCONS_00007180 lncRNA upstream 194050 42839867 ~ 42841508 (+) True XLOC_003707
TCONS_00007183 lncRNA downstream 25244 43070883 ~ 43077341 (+) True XLOC_003710
TCONS_00007185 lncRNA downstream 249636 43295275 ~ 43297633 (+) True XLOC_003712
TCONS_00008692 lncRNA downstream 486943 43532582 ~ 43535890 (+) True XLOC_003717
TCONS_00007194 lncRNA downstream 597519 43643158 ~ 43646674 (+) False XLOC_003718
TCONS_00007193 lncRNA downstream 597519 43643158 ~ 43646674 (+) True XLOC_003718
TCONS_00007176 mRNA upstream 215828 42726712 ~ 42819730 (+) False XLOC_003705
TCONS_00007179 mRNA upstream 215828 42766097 ~ 42819730 (+) False XLOC_003705
TCONS_00007178 mRNA upstream 220160 42765963 ~ 42815398 (+) False XLOC_003705
TCONS_00007177 mRNA upstream 303118 42730639 ~ 42732440 (+) True XLOC_003706
TCONS_00007175 mRNA upstream 316199 42641469 ~ 42719359 (+) True XLOC_003704
TCONS_00007184 mRNA downstream 68469 43114108 ~ 43116249 (+) True XLOC_003711
TCONS_00007186 mRNA downstream 317436 43363075 ~ 43368382 (+) True XLOC_003713
TCONS_00007187 mRNA downstream 329687 43375326 ~ 43388063 (+) True XLOC_003714
TCONS_00007188 mRNA downstream 355562 43401201 ~ 43414172 (+) False XLOC_003715
TCONS_00007189 mRNA downstream 355953 43401592 ~ 43414158 (+) False XLOC_003715
TCONS_00007172 other upstream 410071 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 1570322 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 1877630 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 1877632 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 2146264 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007198 other downstream 979123 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 1279122 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 1279122 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 1283135 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007206 other downstream 1290027 44335666 ~ 44335780 (+) True XLOC_003733

Expression Profile

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