RNA id: XM_039798326.1


Basic Information

Item Value
RNA id XM_039798326.1
length 1806
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC120557740
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18215706 ~ 18226578 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTGTGcaataactaacgttagctaaagaaaaacacaaactgaTGCTGCTTACCTGACTGGACGGACAGGAGGAGTAAATAAATCACACCATGCTGCCTGATAAAGATGGTCCAGTTGTTGGAGGCGGGAAGAGCTTTCCTGAGGGAGAGGATCTCTCTGTGAGTCTGTTCAGAGAGTACCTCCGTCTCAAAACTGTCCACCCAGACCCTGACTATGATGCTGCTCTTCGGTTCCTGGACAGAATAGCTGACGAGCTTGAGCTACCCATGAGAAAGATTGAGGTTTGTCCAGGCAGAGTTGTGTCGATTATGACATGGGAAGGGACGAACCCGACCTTGAAATCCATCTTACTGAATTCCCACACAGATGTTGTACCCGTTTACCAGGAACATTGGAAATACGATGCTTTCAGTGCTTTCAAAGATGCAGAGGGCAACATTTATGCCCGGGGATCACAGGACATGAAATGTGTAACTATACAGTACATCCAGGCAGTCAGAAGACTGAAGGCAGAGGGAAGGAAACTGATGCGCACTGTGCACTTAATGTTTGTTCCTGatgAAGAAGTTGGAGGTCACAAGGGAATGGAAACATTTGTGAAGCATCCGGAGTTCCAAAAATTAAACATTGGCTTTGCGCTGGATGAAGGTCTGGCCAACCCTGGCGAGGCCTTCACTGTGTTTTATGGAGAGAGGAACCCCTGGTGGATTACAATCCACTGCCCAGGCAGTCCAGGCCATGGGTCGAGGTTTGTGGAGAACACAGCTGCTGAGAAGCTGCGTCATGTCATAAACTCCTTCCTGGACTTCagacagaaggagaaacacaggctaAATACCAGTGAGTGTTTCACTCTTGGTGATGTCACCACAGTGAATATGACCATGGTCAAAGGAGGCGTGGCCTACAACGTCATCCCAGCTGAAATGGACGTCAGCTTTGACCTAAGAATACCACCTACAGTAAacctacagGAGTTTGAAAGACAGATCAAAGAGTGGTGTAAAGAAGCAGGAGAAGATGTCACTTACGAATTTGCTCAGAAACATATGAACCAGAACTTGACTTCTACAGAGGAGAGTGATCCTTGGTGGAACGCCTTCAGTGCAGCCTGCAAGGCAATGAACATTACTCTGGAAAAGGAGATATTTCCAGCTGCCACAGATAGCCGTTTCATTCGAGCGGTGGGTATCCCTGCTATCGGCTTTTCCCCAATGAACCGGACGCCAATTCTGCTGCACGATCACAACGAGTATCTGAACGAGCATGTTTTCCTGAAAGGCATCAGCGTGTTCGAGAGGCTCATCTCAGCTCTCACCAGTGTTCCTGCCTTTCCTGATGAGGCCTAGACAGATCTTAATTTTAATCCTctctaaaatgtatttcaatgatgATTTGAATATTTTACTTGAACATTTTGCAGAGATTACCAAAGAATAATAACATGTATACCATTAGGCCAAACTGAGCACctagccttttttttattttatttgatgattCTCAGGATATAGGCGCAGTAAGCTTTTCATTACTCAGTATTATGGCAGAATTTTAACATACTTACTGCATGTCAACATTGTTGATTTAGTTTGCCTGTGTCTATGCagtcttaaaaatatatcaccTATTGTGTAAACAATGTTTTCTCCATATGGAAAAATCATCTTACTAAAATGTGAAGACGACTTTGATCAACTCTTAGATCAAACGTCATTTAGTTGCCGCTTTTTAAATTTAGCTTGATTTTGAAACTTTGATTCCACAgatatcatttttatttaataaactggaattgaataaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008237 metallopeptidase activity molecular_function
GO:0004046 aminoacylase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53269 lncRNA upstream 362470 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 430026 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 479930 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 487118 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 493488 17715412 ~ 17722348 (+) True G39633
TU53572 lncRNA downstream 222269 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 317577 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 344013 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 347104 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 347404 18573982 ~ 18574211 (+) True G39927
XM_039799106.1 mRNA upstream 3887 18206629 ~ 18211949 (+) True abhd14a
XM_039799107.1 mRNA upstream 3887 18206629 ~ 18211949 (+) False abhd14a
XM_039798894.1 mRNA upstream 14544 18196145 ~ 18201292 (+) False hyal2b
XM_039798291.1 mRNA downstream 5191 18231769 ~ 18286227 (+) True LOC120557727
XM_039798549.1 mRNA downstream 105270 18331848 ~ 18344852 (+) True LOC120557883
XM_039798553.1 mRNA downstream 119171 18345749 ~ 18354841 (+) True p4htm
XM_039796308.1 mRNA downstream 141400 18367978 ~ 18371902 (+) True kbtbd12
XM_039798962.1 mRNA downstream 149972 18376550 ~ 18383095 (+) True c4h1orf159
TU53438 other upstream 21910 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 21910 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 288949 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 322416 17893293 ~ 17893420 (+) True LOC120558252
TU53107 other upstream 606620 17607930 ~ 17609216 (+) True G39581
TU54005 other downstream 1098251 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1390603 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other downstream 1390603 19617181 ~ 19632006 (+) False LOC120557344
TU54184 other downstream 1624970 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 1691311 19917889 ~ 19923549 (+) False abhd14b

Expression Profile