RNA id: XM_039798363.1


Basic Information

Item Value
RNA id XM_039798363.1
length 4606
RNA type mRNA
GC content 0.57
exon number 34
gene id ralgapb
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 44670589 ~ 44708952 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACCTAGACTCACCTGTGCAGGTAAATATGGACCAATCAGTGTGCAGTGGGCGGGGCCATGTGAGCGTGCTCAGTTGCTTCCCGCCCTCTGTGGGCCGAGACGTTGCTGTTGCCGTGGTGAAGCCCCTACGAGCAGGCCTGAGAAACCCCGACACCCGCAGCTTGCTGCACACAGacagccagGTGAAGTGGACGATGGAGGTGTTGTGTTACGGCTTGACTCTCCCATTGGACGGAGACACCGTGCAGCTCTGCGTAGATGTCTACACTGATTGGCTGATGGCCCTGGTTTCCCCGAGAGACTCCTTCCCTCCACCAATCAGCAGAGAGCCCAACCTGTACACCCAGAAGATCCTGCGACACCTGGGCGGCCTCTTCCTGTCCAGgTCCGAGCAGGCGAGTCCcgtctacctgtctctctgtcaacaGGTGTTGCTTGCAGTTCAGTTGTTGGCCAGAGAGAGCGCTGTGATGAGTGGAGACACCTGGGAGACGCTGCTTCACTTCCTGCTGCGCATCAACCACAACATGCTGGCTCCACCCACAACCACAGatgTGTTGGAGCAGCTGTCTCACCTGTCGATGGCAGTACTGTTTGAGGTCTGGTTGCTGTCTTGCTCTCGGTGTTTCCCGTCTCACTCTCTGTGGCAGACGGCCAGACAGATGTTGAGCAGCTGGAGACATCAGCCGGCTGTGGTGGAGCAGTGGAGCCGAGTCATGGTCGCCCTGACCTCCAGgtTGTTAGTGTTGAGCTTCGGTCCATCCTTCCCTCACTTAAAAGTCCCAGATGAAGATGCTTCTCTGATCCCGGCAGACATGGACGACCAGCGAGTCCCCCAGACCTGGTTCAGGTTCCTGCACCTGCTCAGTAATCTGGTGGACCTCAGTCGACCCGTGGCTGCTGGCTCAACTCCTTCCCTCCCCGAGGAGGCGATGCGAGGAGGCGGCCGGCTGCCGAACATCTTCTTCAGAGCCATGAAAGGAGTCGGCACGATGGTCGACGCCTTCCTGGGTGTGACTGTAGTCAACAAAGAATCAACAGAGCAGCAGCTGCCAAGCACTgGAGTTACACCGAGGATCCATTTCAGAGACCGGCTGCCTTCTCTCGGTGTTGCTGTGGCCAGGAGCCCGTTTAAAGACCGACTCCCCCCCTACGGTATTTCTCGACCTCGTTCTGGCAGCGCCCCACCCATCCCGGTGAACATACTGAGCGTGCCCAGTAACCCCCCCTCCACCACTTCAACTTTACACAACACACGACTGAAACCTGTCAATGTTTCCAAGGCAACCAGCAAACCTCCCACGaCATCTTCCTCCCCCCATCACTGGAAGTCTTCCACCCATCCTCCCCCATCCTCCCACCGACCCCCCCCGTCCCCCCTCAGGTGTAACGTGGACTCCCTACTCCACCTGTTCGGCGGATGGCTGTTTGATGCTGCTCTGATCCACAGAGACTCTGCCGGTGATGTCACTGTGATGTCAGAGCGGTGGGCGGCCGGTCGAGCCGAGGCGTGTGGGATGCTCTGCAGAATCTTCTCCTGTAAGAAAACCGCAGAGGACATCCTGTCCGTCTACCTGTCCAGGTTCTACCTGGTTCTGCTGAGGGGTGTCCAGGTGTCGGAGGAGGCGTGTCCTCCGGTACTGGCCTCCATCCTAATGAACTCcacctgcctgttctgctgCGACCTGAGAGGAGTCAACTTGCTGTTCCCCTGCTTCCTGTTTGCTGTGGAGAGCGTGCTGCTCGACAGAGAGCTGTTAAGGTTTAAGAGTTTTGTGAGACCGGTGGATTTACGGCGAGCGTCCATCTTGGTCCTGCTGTCCCTGCTGCCCCTCCCCCTGCAGTTAGGATCCGTCCAATCAGAGGTGTTATTGGACGGGAAGTTCAGTGGTGATGATGTCACAGCAGGTAACTTCCTGTCTCTGAAGCCCCGCCTCCGCAGCATTCTGATTGGAGCTCTGCAGACGGAGACTGACACCACCAACACTCAGATTCTACTCGCGGCCATGTTGAATCTGATTCAGGACTCAGCTCTGTTCGAGGCTGCAGGACAAACTCAGCAGCAAACTGAGTCCTGGCAAGATGGAGCCAGTAGACCCATATCAACCGGGGAAACCAGTGGAACCAGTGGAACCAGTGGAACCAGAGGACCGAGTGGACACAGTGGAACCAGAGGACAGAGTGGACTCAGTGGACCCAGTGGAACCAGTGGAACCAGAGGACCGAGTGGACACAGTGGAACCAGAGGACAGAGTGGACTCAGTGGACCCAGTGGAACCAGTGGAACCAGAGGACACAGTGGACACAGTGTAACCAGAGGACCAATTGGACCCAGTGGAACCAGAGGACACAGTGGACCCAGTGGAACCAGAGGAACCAGTGGAGCTAGTGGAACCAGTGGAACCAGTGGAACCGGCATCCGGTCAGCAGAGATCCTGTGGGTTCAGCTTGTCCGTCTGCTGACTCAGCGTCTGATGGCTCAGTGGAGGAATGACTCTGCAGTTTGTCTGTCTGCATTGGAAGTACTGGGAGGACTGGCAAAggtgGAGGTGAGTGTGGAGGAGAGCGAGAGCAGGCGagctctctcttcagtctgtAGTTACATCGTGTTTCTGTGCAgtcgtcctcctcctctccactcCAGAGATCTGCACTCCATCATCGTCGCTGCTTTCTACTGTCTCAACGTCTGGCTAACACAGCATCCTGCCGTGCTCGACCAccagGAGTGTCTGTTGGAGGTTCTGGAGATAGTGGAGTTGGGCATTTCAGGCAGTAAGTCTGGAAAGGAACAGGAAGTGAGATGTAAAGAGGAGAAAGAACTAAACCCCTCCTCTCTAAGGGTGAAGGAGGCCGCGGAAGCTACGCTGAACTGtGTGATGCAGGTTTCGGGGGCCTTTCCGTTGCTTGGCGACCAGCTGGATGAGGACGCTCTAATTGGCTGCTCCACTCTGAGTGACGCCAGTGTGAAGAAGTTCCGATATTTTGTGGTGGGCAGCTCAGTAATCCTCGCCATGCTGGAACGACCACCAGGGCCAGGAGAACCCAGAGAACCCCGAGAACCTGGAGAACCGGGGCCCGAACCGGGAGAAGCGGCGAAGTGTCCATCGCTCACCGTGTTGATCCGAGGAGCGTCAGGACGCCACAGTTGGACGCTACAGCACCAGCTGCAGCCCCGAGACGGAAGGACAgccacacagCAAACTCCGATCCCAGAGCAGCGTAGAGTCGCCCAGGAGGATTCTGGGATACGATGTGGTGTCAAACATCAGCTGTTTCCTGCCAACATGGACAGAGTTTCTCTAGTAAAAGCTGATCTAAGTATTCCACTCCTGGACGACATCGTCACTGACAAGgtgcagcagcagctgcagcgtCTGCAGGCGGCGTTGAAGACGCAGCGGCTGGTCGAGGCCCAGCCGCAGGTCAGCGGACGCTCGGTTGTCATGACGATCTGCAGGCCGCCTCCTCCAATCAGCAGCTTCCAGACAGCGAGACTCTTCCTGTCCCACCTGGGCCTCCTCACTCCGGAGACACTGAAAAGTTCCGGCAGTGTCCCGCCTCAGCTGCTGTCTCTGGACTCGTCTCTTCCTGGTTTCTCCGACGATCTGAAAAGATTGGACGAGCTGCAGTCCAGAAACTGTGACTCTGCCTCCATCTTCTACATGAGAGCAGGACAGAGGACAGCTGCTGagATCCTGAGGAACGTGGAGTCTAGCTGTAGTGTCCCGTCTTACTTCCTGGACTTCCTGTCGTCTCTCGGTTGGCCGGTAGAGGCGGGGCAACGCCAGAGGGGCGGAGTCAGCATCAACAGTTCAGAATTCCCTGCTGTGCTGGGTGACAGTGGAGGTGGCGTGTTTGATGGAGAGCGGTTTGTCCTGATGTATGCCGACGCTCTGACAGAGATCACCTTCATCGTCCCTTCGTCATCACACACAGCTGATTGGTCGAAGAGTCCAGAGGAGGCGGAGCCTCTGACCAGCCAGCAGTGTAATACTGAGCTCAGCCAAGACTCTGCCCCCCCACCCACAAGGTCTCCAGTTGAAGACATGAAGTCTTTTCGTGACTCTGAATCTAAACTCCTGATTGTCTGGGTCGAACGCTTCGAGGATATCGagagtttcCCTCAGACTGAGCTGCTATCAGAGACCCAAACTCAcgccagcgCGTCAAACGTCCAGCTCATCTTCATCCATCCTCTGAAAACAGGACTTTACCGGATCTGTTTCCGTGGAAACGGCACTAGCAAGTTCAGTCTGGTTGTCCCATTGGTCAACGGGAGTGTGGTCAGCAAACGCTCTCTCGGTTTCCTGGTCAGAGAGACGGTGATCAACTGTTGCCATCGGCGACGGCTAGAGAGTGACTCCACCCTACCGTCCCACGTCAGAAGGAAGCAGATGATCAATGACATCATCCTTCGCTACCACAGCCGCTGCTCTGAACCCGCCTTTTACACCGCCCTCTTCCAGGACCCCTGAACCCCGAACTTTAGTCTCTGTTCCAGGACCCCTGAACCCCAAACTTTAGTCTCTGTTCCAGGACCCCTGAACCCCAACTTTAGTCTCTGTTCCAGGACCCCTGAACCCTAAACTTTAGTCTCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61095 lncRNA upstream 201598 44400478 ~ 44468991 (+) False G45635
TU61094 lncRNA upstream 267414 44400446 ~ 44403175 (+) False G45635
TU61088 lncRNA upstream 267414 44400478 ~ 44403175 (+) True G45635
TU61098 lncRNA upstream 280388 44361162 ~ 44390201 (+) True G45636
TU61362 lncRNA downstream 5221 44714173 ~ 44714690 (+) True G45831
TU61348 lncRNA downstream 33323 44742275 ~ 44744790 (+) False LOC120557302
TU61402 lncRNA downstream 97758 44806710 ~ 44807403 (+) True G45863
TU61415 lncRNA downstream 114576 44823528 ~ 44824784 (+) True G45873
XR_005638908.1 lncRNA downstream 131110 44840062 ~ 44841232 (+) True LOC120556889
XM_039798361.1 mRNA upstream 6388 44647330 ~ 44664201 (+) True ctsa
XM_039799169.1 mRNA upstream 44989 44620282 ~ 44625600 (+) True snrpb
XM_039798856.1 mRNA upstream 89646 44576958 ~ 44580943 (+) True ube2c
XM_039798855.1 mRNA upstream 95010 44568861 ~ 44575579 (+) True LOC120558028
XM_039797928.1 mRNA upstream 104188 44546034 ~ 44566401 (+) True pcif1
XM_039797491.1 mRNA downstream 3463 44712415 ~ 44744790 (+) False LOC120557302
XM_039796848.1 mRNA downstream 62952 44771904 ~ 44803353 (+) True LOC120556948
XM_039796849.1 mRNA downstream 63147 44772099 ~ 44803353 (+) False LOC120556948
XM_039796703.1 mRNA downstream 132364 44841316 ~ 44842831 (+) True LOC120556890
TU61241 other upstream 171293 44495576 ~ 44499296 (+) False tsen2
TU61239 other upstream 175870 44488999 ~ 44494719 (+) False tsen2
TU61117 other upstream 263140 44403903 ~ 44407449 (+) True G45647
TU61091 other upstream 309221 44360786 ~ 44361368 (+) False G45635
TU61017 other upstream 713416 43956827 ~ 43957173 (+) True G45577
TU61350 other downstream 15855 44724807 ~ 44742195 (+) True LOC120557302

Expression Profile