RNA id: XM_039798370.1


Basic Information

Item Value
RNA id XM_039798370.1
length 2281
RNA type mRNA
GC content 0.48
exon number 10
gene id rft1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16035974 ~ 16039274 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTAACGTGTTTCCGTACAATGTGTACGGAAGTCTTACTGCTACTTCAATGGCTACTTCTCCTAGCTTTGCTGCTTGACAATCTCACACTTTTACATGAGCAATAAGGCGCTATTGTTATCGGGTTTCAGGCAGCAACCCTGAGGGTTTTACAGTATGACTCTATAATGAATTTCCTTAATAGAAAGCAGCGGAAACGTTGTCAAATTCACGCTTGACCAAGATTTCCAACGAGTCAGAGGAAGTCCAAAATGAGTACTCAGGATGTACTGAAGAATGCATCTACTCTAGCATCGTACAATGTGTTgctacagGTGATGTTCCGTGTCCTCACCTTTTTGTTGAACGCTTTCACACTTCGGTTTGTGTCCAAGGAGCTGATTGGTGTTGTCAATGTCAGGCTTACACTGCTGTACTCCACATTAGTGTTTTTATCCAGAGAAGCTTTCCGGAGAGCCTGTCTTAGCGGGGTATCTGGGACGAACCACAGCTGGAGACAAGTTATCAACCTGCTATGGCTGACGTTGCCTCTGGGTGTGTTATGGGCAGCCCTGCTGgtctgtgtgtggctgtggctCCTGGAGGTCCCAGACCCCCTGACTGTCCCTTACTATGGCCCTGCTGTAGTGTTGTTTGCTTTGTCAGGAGTGCAGGAGCTCCTGGCTGAGCCCCTCTGGGTCCTGGCTCAAGCTCACATGTTTGTCCGACTGAAGGTGGTCGCTGAGAGCTTAGCAATGATTGCCAAGTGCAGTATGACAGTGGTGCTGGTGGTGTTCGCCTGTGAATGGGGCCTTTACATCTTCTCTGCTGCTCATTTGGTGTACACAGGATTCCTGGTGCTGTGCTACGCTGTTTACTTCATTCGTTTCTTGGGCTCTCAAGAGGCAGCCAAGAAGGGTTTTCCTCTGCACCGTGTTGGCGATCTCTTGCCCTGTAGAGCTGATGGAGAGCCGCTGGTTGACTGGACTCTGGCCCGGCTCACATGGAGCTTCTTCAAGCAGTCCTTCCTGAAGCAGATCCTGACAGAGGGTGAGCGGTACGTCATGACCTTCTTGAACGTCCTCAGCTTTGGAGACCAGGGAGTTTATGATATTGTCAATAATCTGGGCTCCATGGTGGCTCGCTTCATCTTCTTGCCCATCGAGGAAAGCTTCTATATCTTCTTTGCAAAAGTGCTGGAGCGAGGGCGTGATGTCAAAAGTCAGAAACAGGAAGATGTTGCCATTGCAGCAGAGGTCCTAGAGTGTCTGCTGAAACTGGTGCTGGTGGTTGGTCTGATTATCTCAGTGTTTGGCTACGCCTACTCTTACTTGGCTCTGGACATTTATGGCGGCTCTCTACTTAGCAGTGGGGcagGACCCACTTTGCTGCGATGCTACAGCTGCTATGTTCTCTTGCTTGCTGTAAATGGTGTAACCGAGTGCTTTGTATTTGCTGCCATGAGCCAAAAAGAGGTTGACAGGTATAACTTGGTGATGCTggctctgtctttgtctttcctGTTCCTGTCCTACATGCTGACGTGGTGGGCTGGTGGTGTGGGCTTCATACTGGCAAACTGCCTTAACATGGGCCTCCGCATTTTGCACAGCCTGCTTTACATACGCCGCTACTTCCAGTCCAGTCAATGGAAACCTCTGCGAGGCCTGTTGCCCTCCCCACTCCTACTACTGGCACTTGCTGTCAGTGCCGTTGTCACAGCGCTGTCTGAGGGTGTGTTCTGCTGTGACAGCGGCTGGTTGCTAAGGCTGGTCCATATCGCCGTAGGAGCAGCATGTCTGCTCGGTGTGTTTGTGGCTGTTCTTCTCACAGAGACTCAGCTTATTCAGTTTGTGAGAACTCAGCTCATGCCCCAATACAGAAAGAAACACACTTGAATTGTACTGGAAATTGCCATATTGGACTGGAAGAAAGCTCTACTACAAAAAGTTCTAACAAGAGCTGCTGACTGACAGTTACTGTGTGAAAACGAGGGAacaacttttttaaattaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctgatgTGTTTTCACTGGATCATTCCTGTGTTGGCTCATATAAGTATGAACAAACATGTCATGATTGTTTTGGGATCcgataaagaaataaatgtatttttaagaaaCGGATGAATTTGTTACAGGACAATAGATTGTCCTACACAGTAAAGCAAGACTACTAATTCA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K06316 RFT1; oligosaccharide translocation protein RFT1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52310 lncRNA upstream 50878 15984624 ~ 15985096 (+) True G38966
TU52303 lncRNA upstream 98890 15936341 ~ 15937084 (+) False crbn
TU52300 lncRNA upstream 114352 15919430 ~ 15921622 (+) False LOC120557201
XR_005638940.1 lncRNA upstream 114358 15919385 ~ 15921616 (+) True LOC120557201
TU52290 lncRNA upstream 121073 15914539 ~ 15914901 (+) True G38948
TU52394 lncRNA downstream 117439 16156713 ~ 16158362 (+) True LOC120557902
TU52395 lncRNA downstream 117439 16156713 ~ 16158362 (+) False LOC120557902
TU52396 lncRNA downstream 117439 16156713 ~ 16158362 (+) False LOC120557902
TU52400 lncRNA downstream 117439 16156713 ~ 16158362 (+) False LOC120557902
TU52402 lncRNA downstream 117439 16156713 ~ 16158362 (+) False LOC120557902
XM_039798645.1 mRNA upstream 1012 16016980 ~ 16034962 (+) True prkcda
XM_039798644.1 mRNA upstream 1884 16016979 ~ 16034090 (+) False prkcda
XM_039798969.1 mRNA upstream 24468 15991734 ~ 16011506 (+) True LOC120558102
XM_039798971.1 mRNA upstream 24468 15991734 ~ 16011506 (+) False LOC120558102
XM_039798970.1 mRNA upstream 24468 15991734 ~ 16011506 (+) False LOC120558102
XM_039798371.1 mRNA downstream 539 16039813 ~ 16041213 (+) True mustn1a
XM_039796384.1 mRNA downstream 10404 16049678 ~ 16060330 (+) True eefsec
XM_039798595.1 mRNA downstream 109851 16149125 ~ 16157509 (+) False LOC120557902
XM_039798001.1 mRNA downstream 122686 16161960 ~ 16167138 (+) True arpc4
XM_039796553.1 mRNA downstream 523591 16562865 ~ 16566395 (+) True emc3
TU52306 other upstream 69867 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 388123 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1161515 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1219538 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1698214 14335389 ~ 14337760 (+) True LOC120557952
TU52330 other downstream 10631 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 393964 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 478262 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1072839 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 1153947 17193221 ~ 17198217 (+) True srsf3b

Expression Profile