RNA id: XM_039798384.1


Basic Information

Item Value
RNA id XM_039798384.1
length 1033
RNA type mRNA
GC content 0.47
exon number 3
gene id npffl
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 21997351 ~ 22000471 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTGCTAAATGGACCTGGTTAAGTCTCATATTAGGGGGCTGGTTCTTCCTCCATCCTGTCCCTTGTTCCCCTATGTACAGGAGCATCCTTCTCCAGCTCTGCTTGGGGGGTTCCAGTGACAATGAGGTGTATATAAGACCCAGTGAGGATGTTACCACCACGGAAGTTAGCCTGGACACTGCAGAAAGAAGACACTTAACCCTGACCAGGACgagtctttcctttcttccccAGGAGCCGAGCCTTTTAAAGTCCACAGGTGTAATAAGACAACCAAAATCCTTCCTCAGAATTCATCTGACCTCCCTTCTGTTTGAGATGATGGACACAGCTGCTCTGGTGACTCTTCTGGCTCTGGTTGTGGCAATGGCTGGCGTCAGTCAGGCTCTTCACATCCAAGGCAGTCTGGACAAAAATGACATCCTGCCAGACTCAGAGGAGAACATCGTTGACCACCTGCTGGGGCTGGAGAGTGAAAACACAGATAACAGCATTGATGATCGTCTGCTGACCGCAGTGCTGAGAGCTCTGCTGCTCGGATCTCAGAGAGAAACCAGGGACTCTGTCCTCCATCAGCCACAGAGGTTTGGCCGTGGCTCTAGAGATCAAGTAGTGTCGGATGATCAGATACATTCCCGCGACTGGGAGGCTGCCCCCGGTCAGATCTGGAGTATGGCCGTGCCCCAGAGATTCGGCAAGAAATGATCTGGCAGGCAGATCCACGCATCAACGTCCTGGGATAAGGCCAAGCAGTGGGCAACTGTGAGAGACAAAATTTGAATGGATAAAtctgaattatatttttttttcaacattgtccCTTGCTTGAGACGTTTAGTTAAATATGACATGAGTTTCTTTTTTCTGATTTCCAACAAAAAAATGTCGAGGGGTGCCTATTAAGGTAATTCTGAGCAGACCTCATTTTTCCTCATAGGAATTATTTAGGATTAAAAGTGTTTGCTGTAAATTGATTGCTAGATTTTTTGTTATTCTTCTGTTTTCTGGTCAAATAAAAGAGCTTtgaatgta

Function

GO:

id name namespace
GO:0005184 neuropeptide hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54960 lncRNA upstream 64119 21911874 ~ 21933232 (+) True G40840
TU54965 lncRNA upstream 79540 21917243 ~ 21917811 (+) True G40842
TU54900 lncRNA upstream 219755 21713797 ~ 21777596 (+) True G40804
TU54919 lncRNA upstream 221934 21760799 ~ 21775417 (+) False G40819
TU54916 lncRNA upstream 221934 21771445 ~ 21775417 (+) True G40819
TU55035 lncRNA downstream 201655 22202126 ~ 22202736 (+) True G40904
TU55057 lncRNA downstream 273603 22274074 ~ 22274301 (+) True G40923
XR_005638962.1 lncRNA downstream 294483 22294954 ~ 22297812 (+) True LOC120557379
TU55086 lncRNA downstream 388707 22389178 ~ 22425121 (+) True G40948
TU55200 lncRNA downstream 554146 22554617 ~ 22554845 (+) True G41021
XM_039798182.1 mRNA upstream 4740 21950376 ~ 21992611 (+) True itga7
XM_039798184.1 mRNA upstream 4740 21950376 ~ 21992611 (+) False itga7
XM_039798185.1 mRNA upstream 4740 21950376 ~ 21992611 (+) False itga7
XM_039798186.1 mRNA upstream 4741 21962914 ~ 21992610 (+) False itga7
XM_039797627.1 mRNA upstream 57577 21926042 ~ 21939774 (+) True LOC120557365
XM_039798884.1 mRNA downstream 6069 22006540 ~ 22043893 (+) True LOC120558047
XM_039797741.1 mRNA downstream 143900 22144371 ~ 22192386 (+) True col2a1b
XM_039797742.1 mRNA downstream 143900 22144371 ~ 22192386 (+) False col2a1b
XM_039797631.1 mRNA downstream 220827 22221298 ~ 22252681 (+) False LOC120557368
XM_039797630.1 mRNA downstream 231415 22231886 ~ 22252681 (+) True LOC120557368
XR_005638988.1 other upstream 5552 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 1848661 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 2073802 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 2138010 19851548 ~ 19859341 (+) True cenps
XR_005638959.1 other upstream 2365339 19617181 ~ 19632012 (+) False LOC120557344
TU55524 other downstream 1748439 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 1757287 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 4268131 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 4542036 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 4542036 26542507 ~ 26548799 (+) False G41850

Expression Profile