RNA id: XM_039798396.1


Basic Information

Item Value
RNA id XM_039798396.1
length 7097
RNA type mRNA
GC content 0.43
exon number 14
gene id celf4
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10554026 ~ 10639135 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCctcaatgcaaaaaaataaaagggtgCCAAGAAGCTAGGACGAGGGAACGTGGGTGTAAATAGACAGTGAACGCtcttggtctctctctctccctctctctctctccctctccctcccccttctctttctctctgtctctcttttatgAAATCAATGAACGAGTTATAGGGTAGGACTTACATATAAGGAATCAAAGCCTCCACCGGGACCAACGGCATTGCGCGCTTTTGATATGCGTCTTCGCCAAATGCTACATGTGTTTTCACATCAGTGTAAATATTGGCTTTGATAGGACGAGAGTGGAATCAGCTCTGGCACGGCTTGGTCTCGGAACCAAATTTTGACCAAGACTTCCACgagctttttttcaacataaaacgATTCTCTACCATCACCATCTGCTGCTGTTTGTACCCATCCCAAGTCACTGGCCGGTCCGAAGATGGCAACTTTAACCAACGGGCAGATGGACGGCACGGTGCACGGTGTCGGTGTGGTCTCCGCCAGCACGAACGGGCTCGTGAACGGATTAAGCCACAGCCACAGCCCGGTGGGCTGCCCGGCCACCATCCCCATGAAGGACCACGATGCCATCAAACTCTTCATCGGTCAGATCCCCCGCAACCTGGATGAGAAGGACCTCCGGCCCCTCTTCGAGGAGTTCGGCAAGATCTACGAGCTCACTGTGCTGAAGGACCGCTTCACGGGCATGCACAAAGGCTGTGCCTTCCTTACCTACTGTGCCAGAGAGTCGGCCCTGAGagcccagaatgcattgcacgagCAGAAGACCCTGCCAGGGaTGAATAGACCAATCCAGGTGAAGCCAGCAGATAGCGAGAGTCGAGGAGAAGACAGAAAGCTCTTTGTGGGCATGCTCAACAAGCAACAGTCAGAAGATGATGTGCGGCGCCTTTTCGAGTCCTTCGGCAGCATCGAGGAATGCACCATCCTCAGAGGTCCCGACGGAAACAGCAAAGgcTGTGCATTTGTAAAATACTCCTCTCACGCTGAAGCTCAGGCAGCCATCAGTGCACTACACGGCAGCCAGACAATGCCTgtgtgggtgggtggatgggttGGTGCACAGGGTGCCTCATCCAGTCTGGTGGTGAAGTTCGCCGACACGGATAAGGAGCGCACCATCCGCCGCATGCAGCAGATGGCTGGTCAGATGGGCATCTTCAACCCTATGGCCCTGCAGTTTGGAGCCTACGGAGCCTACGCTCAGGTGCAGCAGCAGGCGGCATTGATGGCATCTGTAGGCCAGGGAGGCTACCTCAGTCCAATGGCGGCCTTTGCTGCTGCCCAGATGCAGCACATGGCCACCATCAATGGCATCCCAGGAGCACCGCTGACCCCAACGTCAGGTGGCAGTACTCCTCCAGGCATCAGCGCCCCCACAGTGACCAGCATACCCTCCCCCATTAGTGTAAATGGTTTTACTGGCATGCCGCCCCCCCAGGCAAATGGGCAACCTCCTGCAGAGGCTGTCTTCACCAACGGCATACACCACTATCCTGTGTTGCAGGAGGTGGTTTTTAGGGAGGACTCGGAGAAAAACGGCTTGGGCGTGGCTCAGCGGAGTTGTTTTGGGGTTCAGGGTGGCTGcttcatctcctctctctctgaagctcaaagtcccactgcaGCTGATCCTCTCCAGCAGGCTTACACAGGAGTCCAGCAGTATGCAGCCTACCCTGCTGCATACGGCCAGATCAGCCAAGCCttcccccaccctccacccatCATTCCACAGCAGCAACGAGAAgGACCAGAGGGATGCAACCTGTTCATCTACCACCTCCCTCAGGAGTTTGGGGATGGAGAGCTGATGCAGATGTTCCTGCCTTTCGGTAATGTCATCTCCTCCAAAGTGTTTGTGGATCGGGCGACAAACCAAAGTAAATGCTTTGGGTTTGTGAGCTTCGACAACCCAGGTAGTGCCCAAGCTGCCATCCAATCAATGAACGGCTTCCAGATCGGCATGAAAAGACTCAAGGTGCAGCTGAAGAGGCCAAAGGACGCCAATCGCCCCTACTAGCCACCCGCCCCAGCCAGCCGCCGCCACCCTGGCGGCCGGGGCAGCCGTCGCACACAGGGAAAGACAGGTTTTGTTGAGCTGAATCATATGTTGACTTCTTGCTACCCGCCACTGAGTGCAAACTCAGCATCTTGACCACAGAGGCTGCTTCAGAAACCGAGGAGAAAGCGTGCGATGACAGAGTCAAGGACACCTCTTTTTGGATGTACTAAAACTTTGGAACTCAGAGAGAATTTGTACCAGCCTGGTTAGCCCCAGGACCTTTTTTCTtctgcacacatatacacacctcCTTCCCTACAAAACCCTGCTTGAATAACAGCTACCTTTTCTGGACCACAAAAACTTTTACTTGAAcaatgaggggaaaaaaagtaaaagaaactCTATCAATACCTACTTACAATGACCAACCCCACTGAACTCTTAAAGGGAATACGGATGTCAAAAGTCCAACAAGaacaaaactttttaaaaactgaATAGAAGATTGCCGTAGGAAATCTTTCTGTAAGACGGTTTGAGTTTGGGGCAATTGACTTTTGAAGACCAATTTATAAGACTTGAAACAAAAAGGGACAAGAAATTCTCGGAAAGAGAACTAAAGTAGGGAATGTGATATTTTCAGGACACAAATTGGCTTCGATTTGGGATGGCCATCTTTAGCTTGGAGTGCCTGTCCGTTTCCAGGGGATACCGTTGCCAAGGAGAGCCATAGCAACGGTCTCCAGGGAGTCTTACCTGTCATTCCTTAGTTGTTTTAGGGACCAAAAGaccaaacatttttattgctGAGGACTTGTAGCTCTAATATACTCGGACCACTGCATCTCTTTCAGTCAGTGTTAACTGGTTGAGGAGTTGCACTTAAAGGAAGTGTACATTTCGAATATATACaacacatgtatatatacatatatattgctGATGTGCTTTTTGAATACAGGCAAAACTATTTCAGATGACCAAATGGGGTCTCTCACTTCGCTAGTTTACAATTActcaaaatgtttattttttctcttctcattTTGTCTTGGGAGGGATGGCGAGTGCATGGGAGGGGCTGCTCCGTATCACAGCCTTATCTTTTTTAACTTGACATCCTAACCTCATAGATAGAATAACATCAGAAACGTTTGAAATATATGAACTTGTTTATATTTGcagtacatatatatgtataacaaGCATTCAAGCAAATGTattcatatatacagtatatatggatAAATAGATATTaatcacaaacaaatatatgtatttatatgcacatattttatatgtgtgtctgtatatagaACGGCTTCTGACTATGTTGAGCTGTAATTTTTTGTAGATTTTAGCTGGAGTTTGAAACATTGCTCTGCTTGGGAAGAATCGCAAATCTGGCAGCTCCCAAAACTGCAGGCATTCCTATCTCTGATTACCTATATGCTGACACACAATATATTGCTAAAAGATACATGTGTGAGAAAACACATATGGTGTAAATATTATCTGAAAATGCAAAAAGCCACATCTCAGTAGCAGGCTTTAAGAGAATCAGGCTAAATGATTTTAGAGGAAAAGGACAATTATCTTCGACTCTATTCCAAACATATCTTTTGAgcttactctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacaaacttcTCTTTGAAACTTGAACCAAAATGAATATGTCTCACAACCCTTGCTCTCTTTTGCATTCAGTAAAGTGCATGTAGCGTATGGGCTGTCACCATGTCAAGGTGTGCCTTGTCACCTGCAGAATCTGCCATCAAGCACTGTGCTCtcagaaaacaaagacaaaaaataataattaaacacacactgctgcaaGCAGCCAACACGCTATTATGATGTCAAAACTACAGCCAGATCCATATCATTTCTCAGCCACATAGAGAGCTTCAGTGCATGTCCAATATAACAAAACATCAGACCACTGTTGGTCCATCAATGTCTTTGACAAACAGAATGCATTTAGAACTAATTTAGACTCATGCGATTACACTTCAGATAAAAGCGGGCATTAGGTAACCTGTTAGCACAGGTACTAACTATCAAAGCTGTGTGCAGGGCACCTGTGACTACGTTCCACTGGTTGGAGTCAAAACTAGGGTAAAGTTCATGGTGGCGACTGACATGACGTGGCTTAATACGAGAAGTGGTTGAGCTTATTGGACCTGCCATTAGGTTTAAATGGTTATGAAGGTGATGTAATATTGATGAATATGTTAAAATTAGAGAGCTGGCTTCCCACTGAACAGAATAAGGGAGGTTTTATGTACTTTCCCCATCCAGCAGTTACTGTGTGGATCTCTGCTGGTAATACTTGACATGAAGCATATCCTTTAGAAGATGTTATATTGCCTTATGTTATATGCCCTCATACAATCAAATATACACATAAAAGCATAATGAAACTGTAAAATGAAGCAATAAGAGTGAAAAGCCATTTACCCATCACAACTGCTGTATCACTGAGGCTGGTTTCATATTGCTTTAGCATACAGTTTCTCATAATAGTCTACAAAAATGGTATGGACACCTACTATATACCTGCAAAAGGTCAACAGACTTGGATTTATTGGACCCTGCATTCAACACATATTCAGCGGGTGAAGATTACTCAatgaatatttatatatatgaatatttatAAGGCTATATGACACTTTGGAAGACAATGCTTCCTGTTGGGTGATGTTACTAGTTTTTCCTATACACTGCTAATTATGCCATTTCCCTAGTGTCTGTGTCTAACCTTTTTAGCAGATTGAATAATTTAACATTTACCTTCCAAATCTTGCGAGGCTAAAAGACGCCACCACACATCCCAGGACGCCACTCTTTCTATGTGCCACATAACGATGGCCTGACTGTGGCGTACAGTGCAAACCAGATGACCATCATGATCATTTTTTTGCTCTGACAGTATCCGTGGTTGGTTAGGTACAAAAACGTCTGGTACATCCACCTGAGCTGCCTTTGAGCTAACAATAACATCTGAAGCTAAATGTCATGTCTGGTGTCCCTGATCGCCACACTGTGTGCCCTCTTCGACTGCCCCTCGCTGCTCTGAGAAAATTGAAAAAGGTGTTGATGCGGcctgtgcttttttttaacgGTTTGTTTGAGCAATCACTCATGTCTTTCACCTAGCCCATGTTTTAATGTCGAGTGAAATGAGGGAGGGGAAGCAGAACGACCACGGGAACTAGAATGCCAAGCACCTCTTCTTCATTTGCTCCAACTTGAAGCTGCAAGTTTACATAAGAAAAGTAAAACAAAGTATTGTGGttcaaaaacaacaagaaacagAGCAGAAgtttgaatataaatatatatatataaatatatacataaaccgatgaatatactgtaaattgtttctttttttgctccGTTTTCCTCTGTACATAGGTTTGCATATTTTATAGGACTTTTACTTCTATCTACAAGGACTGGATAAAGTActttaattctttaaaaaaaaaatatacgaATGAAAACATGATAATGCTCAATAAAACCaggtacaaaaaaataaataaaaaatagtcatTAGGATACAGTACAAACTCTAGGACCTGACCAAGGCATTTATCCAGAATACAGTCAGGGAGAGCATTGACCTCAGTTAGAGCTTAGACACACATTGAcctattttataaaaataaaaaatactttgatGGGTTCTATTCACTTATCTATTTGTTTAGATATTAATTTATAAGTCATGTCTGAAATAATATGCATGCTTTCATGGCATTATTTTTCTATGAGTTGGTATGTGACCaaatagtttttatatgacATGCATGGGCCACTGTTGTGGTCCACAGATGATCATTATTCCTGTCTGCAGGACCATGCCTTCAGCACTTCTTTGATGATGTGGAAAAATGCTCCTACTGACCAAGTGATGTCAAAGACatatttttaatcatttatttatgtctttatttatttatttatttgtagttaagtatttatttattcgtGCTGTTTGATTCAAGATCTGAGCTCTTATTGCCACTGATCGATTTGCTTGTCAGTGCTACTTTGTATCACTACATCACATAACACCACTTGGACGTATTGGCGAACTCTGAATTTAACAACTTCAAAGACTGATTTTACATTTTCCTGTTGCTGATAAACTATTCAAAACAATGCAGTACACTACTAAAGCCTTATGTATATTTGTTATTATAAAATCCTATTGTTCTGTTCCAAAATGTTAGCTTAGGTAaagattgttaaaaaaaaaaaaaaaaagatgccaaTTGGAGGTTTGTCTGTCATTTTGAATACCATTTGCTTATATTGTGAAACCTTAaatcaaagtgaaaaaaaggggCAATTCCTAGTTAACCACTCCCTCATAAACCAACTGTTCAGTCAGATATGTAATCACAACATAAGATATGCCTTGAGGTCACTATATGTTGCTGCTAATGTGTAAGGAGCTAATGTCTGACGAATTGCTAAACTGCCTGCATAAAACACCATTTTGGATTTCTAAAACTTTATTCCCCTTCTCCTGTTTATCCAATCTTGCTTTGTATTGTTTGACAGAGCTCTGATCTTGTTCAACTGATGTGTTCTACCAAGagcaaaattcaatgaaaactGCACTATCTCATCAAAAACAATTGAGTTACTATGCTTCTTTTCAGTGCTGTTGTTAgtagttttatttctaaagcTCAGTAGTGTTGCTAGAATCACATTTTCCCTCATATGGTTTTCAAAGTATTCTGGAAATCTATTTCCCAATTTCAGCACATATGGAGGGTGGGGAAATGAATGTTGCATATTAAGCTTTGCCGGGTTCCTGATGAGCTAAGCTTCTGATTGGGCAGTGCGCTTTAGGCTCCCGTCCCTGTCTCTCCAGACTGCACCATTCTATGGTCCCCTGAactctttttttgtaattttaaatgaatgatgcGTCTCAGCTTAGCCCAATAATAAAGCACAGTCTAGAATAAAG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50126 lncRNA downstream 645 10552293 ~ 10553381 (-) True G37361
TU50074 lncRNA downstream 63974 10488800 ~ 10490052 (-) True G37321
TU50051 lncRNA downstream 97606 10453961 ~ 10456420 (-) True G37305
TU50031 lncRNA downstream 157771 10387917 ~ 10396255 (-) False rhobtb3
TU50017 lncRNA downstream 242872 10310109 ~ 10311154 (-) True G37276
TU50133 lncRNA upstream 21651 10660786 ~ 10661268 (-) True G37364
TU50216 lncRNA upstream 327422 10966557 ~ 10974888 (-) True G37418
TU50220 lncRNA upstream 343935 10983070 ~ 10988818 (-) True LOC120557925
TU50224 lncRNA upstream 386000 11025135 ~ 11147436 (-) True G37424
TU50297 lncRNA upstream 508778 11147913 ~ 11154364 (-) True G37482
XM_039797462.1 mRNA downstream 17676 10532526 ~ 10536350 (-) True tpgs2
XM_039798048.1 mRNA downstream 33323 10501666 ~ 10520703 (-) True zgc:64106
XM_039798047.1 mRNA downstream 56778 10491316 ~ 10497248 (-) True nop56
XM_039798074.1 mRNA downstream 111957 10434200 ~ 10442069 (-) True ube2r2
XM_039798592.1 mRNA upstream 273522 10912657 ~ 10918992 (-) True myorg
XM_039798594.1 mRNA upstream 279891 10919026 ~ 10921854 (-) False LOC120557901
XM_039798593.1 mRNA upstream 279891 10919026 ~ 10921854 (-) True LOC120557901
XM_039798033.1 mRNA upstream 283258 10922393 ~ 10928985 (-) True zgc:109965
XM_039798034.1 mRNA upstream 293100 10932235 ~ 10943639 (-) True fam219aa
TU50114 other downstream 17673 10534954 ~ 10536353 (-) False tpgs2
XR_005639079.1 other downstream 59704 10494203 ~ 10494322 (-) True LOC120558250
XR_005639075.1 other downstream 61669 10492290 ~ 10492357 (-) True LOC120558246
XR_005638890.1 other downstream 547853 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 1158456 9394739 ~ 9395570 (-) True G37045
TU50209 other upstream 293274 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 293274 10932409 ~ 10943628 (-) False fam219aa
TU50233 other upstream 412164 11051299 ~ 11053085 (-) True G37432
TU50355 other upstream 701623 11340758 ~ 11343123 (-) True LOC120557334
TU50558 other upstream 1276754 11915889 ~ 11924426 (-) False dlgap4b

Expression Profile