RNA id: XM_039798500.1


Basic Information

Item Value
RNA id XM_039798500.1
length 4568
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC120557854
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12339555 ~ 12370646 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATAACAAAAAGTAAAGACCATCTATTTGGGTCCTGAAGAAGGAGGGGTATTTCACGTCGGACTATTGAGTTTTCTTCATGTTCGTGTGTACGTTTGCCCGTCAGTGAAATACAGTTGCGTCTCAGCCATTTTTTCGTTGGATGTTCGTTGGCCGCGGTCGCAGATCGGTTAATAAGCTGGCTGAACTTGGTGCCGCGTTTAAGGGTTAAAGCAACCAGCTAGCCacgttgctaacgttagctactacaAGCGCTGCTGTGTGAGCCAACGTCTGGAAGGGCGTACGAGTTTGACGTTTTCTCCCCAAGTCTCCTCACATTTTTGAGTTTAGTACAACGCGGTCCTCTCTCCTCAAAGCTAACCCACCCAGTCAACATGGAGGGGACACACTTTGCAAGAGCATGAACACGACGACAAACGGCGACTAAAGAGGATTAAAAGCAACTCGGTCTTGATGGGGAAAAGTTGAGTTGAGGATTAACAACTTGGGATAAACTGAAGAACGGTTTCAAGTCTTACTATTGTATAAGGGCATGCAAAAACCTCAGTGATGGAGTCAACAGTTGTGAGTACGTCCACTCTGGCCCCTGATGAGTTTGATAGAAACGTGCCGCGGATCTGCGGCGTGTGTGGTGACAAAGCCACCGGCTTCCACTTCAATGCCATGACCTGTGAAGGTTGCAAAGGTTTTTTCAGGCGCAGTATGAAGCGCAAGGCCGCCTTCACATGTCCCTTTAACGGCAGTTGCACCATCACCAAGGACAACAGGCGCCACTGCCAGGCATGCCGACTCAAACGCTGTGTGGACATTGGCATGATGAAAGAGTTCATTCTGACAGATGAGGAAGTGCAGAGGAAGAAGGACCTGATTCAAAGGAGGAAGGATGAGGAAGCACAGCGTGAAGCGGAGAAGGAGGCGCGACGGCCCCGGCTCAGTGACGAACAGAGTCAGGTCATCGCCACGCTGGTGGAAGCGCACCACAAAACATATGACGACTCCTACTCTGACTTCTGCCGCTTCAGGCCTCCTGTTCGCGAGGGCCCAGTGACGCGTAGCGCCAGTAGAGCGGCCTCTCTCCACTCTCTGTCTGATGCCTCCTCTGACTCCTTCAGTCACTCTCCAGAGTCGGTCGACACAAAAATGAACTTCAACAACCTGCTGATGATGTACCATGAGCAGGGCAACAGCCCTGACTCCAGCGAGGAGGAGGGCTCCAGCTTCTCCATGCTGCCCCACCTGGCTGACCTGGTCTCCTATAGCATCCAGAAAGTCATTGGCTTTGCCAAGATGATCCCTGGGTTCAGGGAGCTGACGGCAGAGGACCAGATTGCCCTGCTTAAGTCCAGCGCCATTGAGGTGATCATGCTGCGCTCAAATCAGAGCTTCAACCTGGAAGACATGTCCTGGAGCTGTGGTGGGCCTGACTTTAAATACCAGATCAGTGATGTCACCAAAGCGGGCCACACTCTGGAGCTGTTGGAGCCACTGGTGAAGTTCCAGGTGGGCTTGAAGAAGCTCAACCTGCAGGAGGAGGAACATGTGCTGCTGATGGCCATCTGCTTGCTTTCTCCAGACCGCCCAGGTGTGCAGGATCATGCACGGATCGAAGCCCTCCAAGACCGTCTGTCAGAGACCCTGCAGGCCTACATCCAGCTTCGCCACCCAGGGGGACAGCTGCTTTATGCCAAGATGATCCAGAAGCTGGCCGACCTGCGCAGCCTCAACGAGGAGCACTCCAAACAGTACCGCTCGCTCTCCTTCCAGCCGGAGCACAGCATGCAGCTCACTCCGCTCGTGTTGGAGGTGTTTGGCAGCGAGGTCTCCTAGAACCTCTGAACCACCTCAGTGAGGCAAAATGGAGGGAGGGAGTTGAGGATGCGCTGGATGGGACTaaatggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatggagagCAAGCAGATGTTAAGAGACTAAACAAGGAAACTTCATATAATACAAATCAACTATACATACAACTTCTGCTTATATACAGTGTTTTTGTCTATTTAAATCAACAAGCAGCTGCTTTAAATGCCtggacattttgtgtgtgtacgtgacgtgcacacaccaacacaacaaGCATACTCAGTTATTCATTTAGCCATTCAGTTGAGCTACCTCTTTGTTTTACTGGGGTTGTTTTACATCACCTATGTAAAACAGTAACCTTTACACGGACAATTTAGATACAGTCTACTATACTATACTGACAGTTCAGTATTTTTCAGTGCAAAAGCAGTGCCTGCACATTACTTTGACTTTTTGATGTTtcaaaatttcatattttttttttttcatctgcttCTCTCCAAGGCAGCGTCTATATGACTGTGTATACCATTCAAAACACATACCTTTCACCAAAGGTATGGTCAACTACTTTCTCAAAAAGCTTCCAGTACCTAAAAATAGCCTTGCTGCTTGATGGCTCGTTTCACGCATGCAGCCACTCGACATGCTAGCAAGTTGTCTGACTAGCCTCACAGCCTATGaaaactaaactgtcattatttaggTTTATACTGCAGAGTACAGAACGGTCTGTAATATAGTGAGGTTTTGATAGGACTTTGGGGTGCCTGGTTTTGAGATGAGAATTAGCCACTAAATGTGTTAGCTACTTTTACACTGCTAACTGTCAATCAAACCAAGCCGGCATTATGGCTTGTTACGctcttaaaaatgtttttcattattCTTCtcgttttgtttgtttccatgTAAATAGTTAATTACTACCACATGTATCCTACGCACTGTTTTACCACATTTTACTCAAGCCTATGTattgatatacagtatctatattATCACAGATTTTAAAGGGCTAAAATGCCAAATCTAACTGGATAGTAAATCGAGGCCAAAGCAAGGGGCCTGTCTTGTTAATATATAGCTGCATACCATACTTGGAATTGGCATATATACTGATGTAATTGCAAtggatgttttttctttttttttgtacgtCATTTcaccttttaaaaacaattccATGAATTGTTCCTCCTTAGTAAACAGTGGCTCGGTGGGCAGAGAGCTTAGGAAGCTGCTTCAGACCTCCCCAGATATCACACCCCTTTCGTTTCTGACAGGGAAGTGGATTTTCTAGAATGTCGGAGGGCCTGGGCTGTGCTGATGGTGCGCACCTCTACACTCAGGCCCTCCTGTTTGATGATGTATGCTGCGCAGCCCTCTAGTGGCTGCATTGTGTAAATACCaggtatataaatatataaaagatgTCTGCCGCTGTACATAGGGCTACATAAATAATTCTCAAGGCTAATTCTTTCAGAAATATATATGCAAATATAATAttgaccctttttttcttttttgattcATTATCACTACTTTCTGAGACACTATGCTCTTTTGTTTTGACTTTGATCAAGTTTTTTTGTAAGAATGAGTTAGAAATGGCTTAAACAGGGATTGCTTTGTGTATTTGACTcagtcaaattattttttttagtggtgggTTGATGTATTTGCCTAATTTCCAAGGTTCATTTTCAGAAAGAGGACAGGCTCTCTAATATAAGCCATATAGATCACTAAGCTAGTTATACACCTGATACATTGTATCGAAATTATGACTCCAGAGCCTTGGATATCCTCACAATATAATCTTTAAAATTCATATGCTATTTATCCATGGCTCTTGGAAGATAAGCTTGTATATGATAGGAGCTCATATGCCTTCTCTCTGCTGTCATCTTGGGCTTATGCTTCATCAGACAGCATCTAATGGCTTATAAACCAAACTGCCAAGAGAATTTAAAATGCTTAGGTTTAGAGGCCAGTAATGTTTAGCTTGCTGCATGTGGGGTTATGGTAACATTTTATGAGATGCGTGTtttattatatcaacataatTCCCCAAAGAAGTGTTAAGTCAAATTCTTGCCAAGTTCAAATGATTTCACTAAAGCGTCTCTCATATATGACATGAGTCTCAAACACATCGTTTTTGGTCTTCTATTTGCTGTGTGACAGAAGACGTTGATTAAAACGGTTCCTGTGATTGGCCTGTACAGGCCTCCTATGTCACACCGAGAGCAGACCAGGGTTACTCTGTGATCTTAGAGGAAGATGGTGGGAGAGCGAGCACGTGTTTGTCTGGACGAGTTCTCACGACTGCTTTGTGTGAGATTGTGGCAGTTGTTGCTTTAATTTGTTCAGACCGCATGGCTTAGGATGTTTAGTCCATTCTCCGTCAACGTGGTTTTATTCCAACTCTCCATCAGTCACTGTGACAACTAGCTGACAGTCGGGGCTGCACACAGAGATGATCTGCATAGCAGAGATAGTTAAATAGTTTTTGGATGTAATCATTGGTTTTCTTCTTGAAAATCATTGGGattatgttgtgtatatatatacacaacattattatgttgtgtgtgtgt

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0070561 vitamin D receptor signaling pathway biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08539 VDR, NR1I1; vitamin D3 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50620 lncRNA upstream 39060 12300250 ~ 12300495 (+) True G37718
XR_005638918.1 lncRNA upstream 173910 12152765 ~ 12165645 (+) True LOC120556983
TU50577 lncRNA upstream 228767 12109304 ~ 12110788 (+) True G37691
XR_005638970.1 lncRNA upstream 314818 12024330 ~ 12024737 (+) True LOC120557465
TU50441 lncRNA upstream 476585 11861473 ~ 11862970 (+) True G37606
TU50642 lncRNA downstream 12810 12383456 ~ 12383735 (+) True G37725
TU50645 lncRNA downstream 14345 12384991 ~ 12385216 (+) True G37728
TU50646 lncRNA downstream 14744 12385390 ~ 12385646 (+) True G37729
TU50675 lncRNA downstream 79406 12450052 ~ 12450548 (+) True G37742
TU50696 lncRNA downstream 214011 12584657 ~ 12585811 (+) True G37761
XM_039798498.1 mRNA upstream 7781 12307361 ~ 12331774 (+) True LOC120557853
XM_039798499.1 mRNA upstream 7781 12307361 ~ 12331774 (+) False LOC120557853
XM_039798497.1 mRNA upstream 7781 12311355 ~ 12331774 (+) False LOC120557853
XM_039798492.1 mRNA upstream 7781 12312049 ~ 12331774 (+) False LOC120557853
XM_039798494.1 mRNA upstream 7781 12312049 ~ 12331774 (+) False LOC120557853
XM_039798010.1 mRNA downstream 23939 12394585 ~ 12436726 (+) False LOC120557555
XM_039798006.1 mRNA downstream 23943 12394589 ~ 12439375 (+) False LOC120557555
XM_039798009.1 mRNA downstream 30260 12400906 ~ 12439375 (+) True LOC120557555
XM_039798007.1 mRNA downstream 30260 12400906 ~ 12439375 (+) False LOC120557555
XM_039798725.1 mRNA downstream 118051 12488697 ~ 12496235 (+) True phf13
XR_005639029.1 other upstream 60931 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 84581 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 534161 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 945221 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 987168 11352078 ~ 11352387 (+) True G37525
TU50647 other downstream 15525 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 345514 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 365221 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 454883 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 821132 13191778 ~ 13191911 (+) True LOC120558254

Expression Profile