RNA id: XM_039798528.1


Basic Information

Item Value
RNA id XM_039798528.1
length 1790
RNA type mRNA
GC content 0.48
exon number 12
gene id hdac11
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4215524 ~ 4242500 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGTAGCACTGGAGCAGGACGTAATAAGGATGTGTCCAAGCAACACTGTGAAGAAAAGACGTCTTCTTTATTTTAGCTGCCTGCTTACAAATAACCGAAGCTAAAATCCTGTCAAAAGGACAAACGCTGAACGTCTGCAGTAACGGAGGTTATTTAGTTCCAGGAGCTGTCGGCGGTGACCAGCGTTATATTCTACATACACAGTGGCAGGTGAAAGTAGCAATGCCTGAAAAACATGTCTCACAAAGAAGATAATGAAGGGAAGAGGAGCTCTCACCACACTGAATTGTACACCAGCATCCCTCGAACATGTCTCCCCATTGTCTACCACCCAGACTACAACATCACCTTCATGGGCCTTGAAAAGCTCCATCCATTTGATGCAGGGAAGTGGGGGAAAGTCATTCACTTCTTGAAAGAGGAGCACTTCATCACTGATGGAAACATCGTGGAAGCCCGGGAAGCTACTGAAGAGGATCTGCTGGTGGTTCACACCAAACGCTACCTCAACAGATTAAAGAACCAAATCTTGGAGGGCTCTAGAGAGtgGTCTCTGGTGGTGGCAACGATCACAGAAATCCCACCCCTCCTGTTTCTGCCTAATTTCCTGGTGCAGCGGAAAGTGTTGAGGCCTTTGCGGACACAGACTGGAGGAACAATAATGGCAGGGAAACTAGCTGTTGACCGAGGATGGGCTATAAACGTAGGAGGAGGCTTCCACCACTGCTCCAGCGACAGGGGAGGAGGCTTTTGTGCCTTCGCCGACATCACTCTGGCCATCAAGTTTCTGTTTGAGAGAGTGGAAGGCATCTCCAGGGCTACCATCATCGATCTGGATGCTCATCAGGGGAATGGACACGAGCGTGATTTCTTGGACGACAGACGAGTGTTCATCATGGATGTGTATAATCGCTACATATATCCTGGGGACGGATATGCCAAAAGAGCCATAAAGAGAAAGGTGGAGCTGGACTGGGGCACTGAAGACTCTGAGTACCTTCAGAAAGTAGAGCTCCACTGTGACGGAGCGCTGAACGAGGTCCAACCTGACATCATTGTCTACAACGCGGGGACGGACATCCTGGATGGGGACCCGCTTGGAGGACTCTCTATATCACCACAGGGCATTGTAAATAGAGATGAGATTGTGTTCAGGGCTGCGACGCGACGGGGCATCCCCATACTCATGGTAACATCTGGGGGATACCAGAAGAAAACCGCCCGCATCATCGCCGACTCCATCCTCAACTTGCACCGGCAGGGCCTGATTGGAGCAGAGGCTCTGGAGGGGGAGGGATCATCATcactggtgaccagcatgatgTGCAGCTCTGGGTCTGTTGGATCGACATTCACTGCTGTATGAGTAGGGTTAGGTATTGTTTATTTaaccgataccggtgctaaaacgatacttttcaAACGGCGCCAGTGCCTAAACCCTGAACCGATACTTACTAGACGGCAAAACGACAGTCGCCGACactaaagaacggcttgtttattgctaaagccatatggtcaaatttaagtgatttattgaaaatttaATAACTTATTTTAACCAGTGaattgctgttaaatgacaaaaaaggaaCCACTAGATGGTAGAAGAGTACTTTACCACAGcattgaatgcaccatgagcttACAAGTTGCAATTGAATGCaccattaaaggtgctgtaggtaggattgcgaagatccaggacaaaaaatttgaacatcgacaacttctcagtccctccccccctttctgctaaagcccaaaacggtctcctaagcccctc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11418 HDAC11; histone deacetylase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47890 lncRNA upstream 385583 3772611 ~ 3829941 (+) True G35739
TU47892 lncRNA upstream 423551 3790004 ~ 3791973 (+) True G35741
TU47888 lncRNA upstream 447136 3767852 ~ 3768388 (+) True G35737
TU47887 lncRNA upstream 447948 3767376 ~ 3767576 (+) True G35736
TU47868 lncRNA upstream 537771 3670690 ~ 3677753 (+) True G35718
TU48009 lncRNA downstream 126191 4368691 ~ 4369050 (+) True G35833
TU48010 lncRNA downstream 127419 4369919 ~ 4370221 (+) True G35834
TU48146 lncRNA downstream 362960 4605460 ~ 4610060 (+) True G35925
TU48164 lncRNA downstream 368038 4610538 ~ 4613004 (+) True G35941
TU48165 lncRNA downstream 373393 4615893 ~ 4617397 (+) True G35942
XM_039799131.1 mRNA upstream 302304 3894305 ~ 3913220 (+) True cfap92
XM_039797012.1 mRNA upstream 384579 3807172 ~ 3830945 (+) True nuf2
XM_039799099.1 mRNA upstream 449484 3759494 ~ 3766040 (+) True c4h1orf50
XM_039798535.1 mRNA upstream 625912 3453600 ~ 3589612 (+) True epha8
XM_039798877.1 mRNA upstream 1142254 2964127 ~ 3073270 (+) True mtss1
XM_039797519.1 mRNA downstream 30442 4272942 ~ 4361643 (+) True fbln2
XM_039797520.1 mRNA downstream 30442 4272942 ~ 4361643 (+) False fbln2
XM_039797521.1 mRNA downstream 134818 4377318 ~ 4386408 (+) True elf3
XM_039799050.1 mRNA downstream 184293 4426793 ~ 4467714 (+) True LOC120558135
XM_039796622.1 mRNA downstream 229664 4472164 ~ 4479342 (+) False optc
TU47964 other upstream 265396 3948834 ~ 3950128 (+) True G35791
TU47821 other upstream 658946 3453793 ~ 3556578 (+) False epha8
TU47676 other upstream 887017 3281732 ~ 3328507 (+) True G35618
TU48122 other downstream 245035 4487535 ~ 4558029 (+) False G35921
TU48123 other downstream 245035 4487535 ~ 4558029 (+) False G35921
TU48126 other downstream 245035 4487535 ~ 4493441 (+) False G35921
TU48127 other downstream 245035 4487535 ~ 4493441 (+) False G35921
TU48128 other downstream 245035 4487535 ~ 4497880 (+) False G35921

Expression Profile