RNA id: XM_039798549.1


Basic Information

Item Value
RNA id XM_039798549.1
length 6016
RNA type mRNA
GC content 0.48
exon number 41
gene id LOC120557883
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18331848 ~ 18344852 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACAGGCACCCAGCAAAGAAGTCTGCACTGAAATCTGCCAGAACAAACCTCCTGCTCTCCTGGTGTCATCAAAGTAAAGGGTCATCATGAGTATTGATCCTGAAATGCAGTGTTTTGGCCCGGCGGCCATTTATCTCCGGAAGCCAGAACGAGAGAGGCTTGAAGCTCAAACCAGTCCCTTTGATGCTAAAACTGCATACTTTGTGGCCGAGCCCACAGAGATGTACCTGAAGGGAAAACTTATTAAAAGAGAGGGCGGCAAAGCCACCGTGGAGACCCTCTGTGGAAAGACTCTCACTGTGAAAGAAGACGACATCCATCCCATGAACCCTCCAAAGTACGATAAGATTGAGGACATGGCCATGATGACCCACCTCAGTGAGCCTTCTGTGCTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTACACCTACTCAGGACTGTTCTGCGTCACTGTGAACCCCTACAAGTGGCTCCCAGTGTACGACTCAGTGGTTGTCTCAGGATACAGAGGCAAAAAAAGGATTGAGGCTCCACCCCACATCTTCTCCATCTCTGATAACGCCTATCAGTTCATGCTCCAAGATAGAGAAAACCAGTCAATCCTGATTACTGGAGAATCCGGTGCAGGAAAGACCGTCAACACCAAACGTGTCATCCAGTACTTTGCGACAATCGCAGTGGCTGGAGGAAAGAAATCTGAGCAGACTGCTGGCAAGATACAGGGGTCACTGGAAGATCAAATTATTGCAGCAAACCCACTGTTGGAAGCTTACGGTAATGCTAAGACTGTGAGGAATGACAATTCTTCACGTTTTGGAAAGTTTATCCGAATTCACTTTGGGACAACTGGAAAGCTGGCTTCAGCTGATATTGAAACATATCTGCTGGAGAAGTCTCGAGTGACGTTCCAGCTGTCTGCTGAGAGGAGCTACCACATCTTCTATCAGCTCATGACAGGCCACAAACCTGAGCTGATAGAGGCCCTCCTGATCACCAAAAATCCATATGACTATCACATGATTAGTCAGGGTGAAATCACAGTCAAAAGTATCGATGACGTTGAAGAATTCGTCGCCACTGATACTGCTATTGACATCCTGGGCTTTACTGCAGAAGAGAAGGCGAGCATCTACAAGCTGACTGGAGCTGTGATGCATCACGGAAACATGAAGTTCAAGCAGAAGCAGCGTGAAGAGCAGGCTGAGCCCGACGGCAATGAGGagGCAGATAAAATCGCCTACCTCATGGGTCTGAACTCAGCTGATTTACTAAAAGCACTATGCTACCCCAGAGTGAAGGTTGGAAATGAGTATGTGACCAAAGGTCAAACTGTCCCTCAGGTCAACAATTCCGTCTCAGCTCTCTGCAAGTCtgtctatgagaaaatgttcTTGTGGATGGTCGTCAGAATTAATGAGATGCTGGATACCAAGCAGGCAAGACAGTTCTTCATCGGTGTCCTGGATATTGCTGGATTTGAAATTTTTGATtACAACAGCTTGGAGCAGCTGTGCATCAACTTCACCAATGAAAAACTGCAACAGTTTTTCAACCACCACATGTTTGTCCTGGAGCAAGAAGAGTACAAGAAAGAGGGAATTGAATGGGAGTTCATTGATTTTGGTATGGACCTGGCTGCCTGCATTGAGCTGATTGAGAAGCCAATGGGCATCTTCTCCATCCTTGAGGAGGAGTGCATGTTCCCCAAGGCATCAGACATCACCTTCAAGAACAAACTGTATGACCAGCATCTTGGTAAAAGTGCTCCCTTCCAGAAACCCAAACCTGCTAAAGGTAAAGCTGAGGCCCATTTCTCCCTGAATCACTATGCCGGCACTGTTGATTATAACATCACTGGCTGGCTGGATAAGAACAAAGACCCCCTGAACGACTCAGTGGTTCAGCTCTACCAGAAGTCTGCAGCCAAACTGTTGGCTCACCTCTATGCATCACATGCCCCAACAGAAGCTGAGGGTGCTGGAAAAAAAGGTGCCAAGAAAAAGGGTGGGTCTTTTCAGACAGTATCTGCTCTGTTCAGGGAGAATTTAGGCAAGTTGATGACCAACTTAAGGTGCACCCATCCTCATTTTGTACGTTGTTTGATTCCAAATGAGTCAAAGACTCCTGGTCTCATGGAGAACTTCCTGGTCATCCACCAGCTGAGGTGTAACGGTGTACTGGAAGGTATCAGGATCTGCAGGAAAGGTTTCCCCAGCAGAATCCTCTACGGTGACTTCAAGCAGAGATACAAAGTTTTGAATGCCAGTGTCATTCCTGAGGGACAATTCATCGACAACAAAAAGGCCTCAGAGAAACTCTTGGGCTCTATTGATATTGACAAAACTCAGTACAAATTTGGACACACAAAGGTGTTCTTCAAAGCCGGTCTGCTGGGAGTTCTGGAGGAGATGAGAGATGATAAACTTGCTAAGCTGGTCACAATGACTCAGGCTCTCTGCAGAGGTTTCCTCATGAGGAGAGAGTTCGTCAAGATGATGGAGCGCAGGGAGGCAATTTATTCTATTCAGTACAATATCCGCTCATTCATGAATGTCAAAACCTGGCCATGGATGAAGCTGTACTTCAAGATTAAGCCTCTGCTGAAGAGTGCAGAGACTGAAAAAGAGATGGCCCAAATGAAAGAGGACTTTGGAAAGATGAAAGAAGATCTGACAAAGGCTCTGGCTAAGAAGAAAGAACTGGAGGAGAAGATGGTTTCTCTGCTGCAGGAGAAGAATGACCTGTTGTTGCAAGTGCAGGCTGAGAATGAAAACCTCAGTGATGCGGAGGAAAGGTGTGAGGGGCTCATTAAATCAAAAATCCAGCTTGAGGCCAAACTCAAAGAGACGTCTGAGAGactggaggatgaggaggaaatGAATGCTGAGCTGACTGCAAAGAAGAGGAAGCTGGAGGACGAGTGCTCTGAGTTGAAGAAAGACATCGATGACTTGGAGCTCACCCTGGCCAAAGTGGAAAAGGAGAAACATGCCACTGAGAACAAGGTTAAAAACCTGGTGGAGGAAATGGCATCTCAAGATGAGACCATTGCTAAGTTGACCAAAGAGAAGAAAGCCCTCCAAGAGGCCCATCAGCAGACCCTTGATGATCTGCAGGCAGAGGAAGACAAAGTCAACACTCTGTCGAAGGCTAAAGTCAAGCTGGAGCAGCAAGTGGACGATCTTGAAGGTTCTTTGGAGCAAGAAAAGAAGCTCCGTATGGATCTTGAGCGATCAAAAAGAAAGCTTGAAGGAGATCTGAAACTGGCCCATGAAACCATCATGGATCTGGAGAATGACAAGCAGCAGTCTGACGAAAAAATAAAGAAGAAGGACTTTGAAACAAGCCAACTTCTTAGCAAGATTGAGGATGAGCAATCACTTAGTGTGCAGCTTcagaagaaaatcaaagaacTTCAGGCGCGTATTGAGGAGTTGGAGGAAGAGATTGAGGCTGATCGAGCTGCTCGGGCCAAGGTGGAGAAGCAGAGGTCTGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGGCTCGAAGAAGCTGGCGGAGCAACGTCTGTTCAGATCGAGATGAACAAGAAGCGTGAGGCCGAGTTTCAGAAGCTGCGCCGTGACCTGGAAGAGTCCACCCTGCAGCATGAGGCCACCGCTGCAGCTCTGCGCAAGAAGCAGGCTGACAGTGTGGCAGAGCTGGGAGAACAGATTGACAACCTCCAGAGAGTCAAACAGAAgctggagaaagagaaaagcgAATACAAGATGGAGATCGATGACCTCAGCAGCAATATGGAGTCTGTCGCCAAATCCaagGGCAATCTGGAAAAAATGTGTCGTACTCTTGAGGATCAACTGAGTGAGATGAAATCCAAAAATGAAGAACACGTGCGACAGCTGAATGACATTGGGGCACAAAGGGCAAGACTGCTAACAGAGaatggTGAATTCAGTCGCCAGCTGGAGGAGAAAGAAGCCCTGGTCTCTCAGCTGACGAGGAGCAAGCAGGCTTACACCCAGCAGATTGAGGAGCTCAAGAGACACATTGAAGAGGAAGTTAAAGCCAAGAACGCCCTGGCTCATGCTGTTCAGTCAGCTCGTCATGACTGCGACCTGCTCAGAGAGCAGTatgaggaggagctggaggccAAATCTGAGCTGCAGCGCGCAATGTCTAAGGCCAACAGCGAGGTAGCTCAGTGGAGAGCCAAATACGAGACTGATGCCATTCAGCGCActgaggagctggaggaggctAAGAAAAAGCTTGCCCAACGTCTTCAGGATGCAGAGGAATCCATCGAGTCTGTGAATGCAAAATGTGCCTCTCtggaaaagacaaaacagagACTGCAGGGTGAAGTGGAAGACATGATGATCGATGTGGAGAGAGCTAATGCTCTGGCTGCTAACCTCGATAAGAAGCAAAGGAACTTTGACAAGGTTCTTGCAGAATGGAAACAGAAGTATGAGGAAAGCCaggcagagctggagggagCTCTAAAAGAAGCTCGTTCTCTCAGCACTGAGATGTTCAAGATGAAAAATTCGTACGAAGAATCTTTGGACCACCTGGAGACAttaaagagagagaacaaaaaTCTGCAACAGGAGATCACGGATCTAACTGAGCAAATTGGGGAGAGTGGAAAAACCATTCATGAACTGGAGAAAGGGAAGAAGACTGTAGAGACTGAGAAGTGTGAACTACAGACATCACTTGAAGAGGCAGAGgCTACCCTGGAGCATGAGGAATCCAAGATTCTCCGCATTCAACTTGAACTCACCCAAGTCAAGAGTGAAATTGACAGAAAACTTGCAGAGAAGGACGAGGAGATCGACCAGATCAAGAGGAACAGCCAGAGAGTGATTGAGTCCATGCAGAGCGCTTTGGATGCTGAGGTCAGGAGCAGGAATGATGCCATGAGAATCAAGAAGAAGATGGAGGGAGACCTGAATGAGATGGAGATTCAGCTGAGCCACGCCAACCGCCAGTCAGCCGAAGCCCAGAAACAGCTGAGAAACGTGCAGGCACAGCTTAAGgATGCGCTTTTGCATCTTGATGAAGCCATTAGAAGCCAGGAAGACATGAAGGAGCAGGTGGCCATGGTGGAGCGCAGGAACAACCTGATGCTGGCTGAGATCGAGGAGCTGAGATCGGCACTGGAGCAGACGGACAGAAGCCGCAAAGTGGCTGAACAGGAGCTGGTAGATGCCAGTGAGCGTGTGGGACTGCTGCACTCTCAGAATACCAGCCTCATCAACACCAAGAAGAAGTTGGAGGCTGACCTTGCCCAGATCCAGGGTGAAGTGGAAGATGCTGTCCAGGAAGCGAGAAATGCTGAAGAAAAGGCCAAGAAGGCCATCACCGATGCAGCCATGATGGCAGAAGAGCTGAAGAAGGAGCAGGACACCAGCGCTCATTtggagaggatgaagaagaacctGGAGGTGACAGTGAAGGACCTGCAGCACCGCCTGGATGAAGCTGAGAATCTGGCCATGAAGGGCGGAAAGAAGCAGCTTCAGAAACTGGAGGCTCGGGTTCGAGAACTGGAGGCTGAAGTTGATGCTGAGCAGAGGCGAGGTGCTGAGGCCATCAAGGGAGTACGGAAATATGAGAGAAAAGTAAAAGAGCTCACCTATCAGTTTGAGGAGGACAAGAAGAATATTGTCAGACTTCAGGATCTGGTGGACAAGCTACAGCTGAAAGTGAAATCCTACAAGAGGCAGTCTGAGGAAGCTGAGGAGCAGGCCAACACTCACCTGTCCAGGTACAGGAAGGTGCAGCACGAGATGGAGGAGGCTCAGGAGAGAGCTGACATCGCCGAGTCTCAGGTCAACAAGCTGAGGACAAAGAGTCGGGAAATTATCACGATCAGGAAAGTAGAAGAGTGAGGAAGAAATCAAGGTTATACAGTAGCAAGAAGCCATACAATATGAGTTACTTGTTCACTCTAGCAAGTTAAGCATGCTGTGATAACCTAAACTCAATAAAAGGTAGTTTGTtgca

Function

GO: NA

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53269 lncRNA upstream 478482 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 546038 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 595942 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 603130 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 609500 17715412 ~ 17722348 (+) True G39633
TU53572 lncRNA downstream 103995 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 199303 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 225739 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 228830 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 229130 18573982 ~ 18574211 (+) True G39927
XM_039798291.1 mRNA upstream 45621 18231769 ~ 18286227 (+) True LOC120557727
XM_039798324.1 mRNA upstream 105270 18215706 ~ 18226578 (+) True LOC120557740
XM_039798326.1 mRNA upstream 105270 18215836 ~ 18226578 (+) False LOC120557740
XM_039798327.1 mRNA upstream 105270 18215873 ~ 18226578 (+) False LOC120557740
XM_039798325.1 mRNA upstream 105270 18215891 ~ 18226578 (+) False LOC120557740
XM_039798553.1 mRNA downstream 897 18345749 ~ 18354841 (+) True p4htm
XM_039796308.1 mRNA downstream 23126 18367978 ~ 18371902 (+) True kbtbd12
XM_039798962.1 mRNA downstream 31698 18376550 ~ 18383095 (+) True c4h1orf159
XM_039798963.1 mRNA downstream 31698 18376550 ~ 18380888 (+) False c4h1orf159
XM_039797796.1 mRNA downstream 39741 18384593 ~ 18391656 (+) True si:ch211-157b11.14
XR_005639014.1 other upstream 105809 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 137922 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 137922 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 404961 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 438428 17893293 ~ 17893420 (+) True LOC120558252
TU54005 other downstream 979977 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1272329 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other downstream 1272329 19617181 ~ 19632006 (+) False LOC120557344
TU54184 other downstream 1506696 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 1573037 19917889 ~ 19923549 (+) False abhd14b

Expression Profile