RNA id: XM_039798554.1


Basic Information

Item Value
RNA id XM_039798554.1
length 3287
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC120557886
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9950010 ~ 9957358 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taatatccttTTCACAAGAGTCATCATGAACTCTCTGAACCAACAGTATGAGGAGAAGGTGCGTCCCTGCATTGACCTCATCGACTCTCTTCGCTCTCTGGGTGTAGATGACGACTTGTCGCTGCCAGCTATCGCCGTAATTGGAGACCAAAGTTCGGGGAAGAGCTCCGTGTTGGAGGCGCTGTCAGGGGTGGCTCTGCCAAGAGGAAGTGGCATTGTGACAAGATGTCCTCTCGAACTgaagatgaagagaaagaaagaaggagaggagtGGTACGGAAAGATAAGCTACCAGGACTGGGTGGAAGAGATAGATGACCCTGCTGATGTGGAGATAAAAATTCGAGAAGCTCAGGATGAAATGGCCGGGGAAGGGGCGGGGATCAGTGAGGAGCTCATCAGTCTGGAGATCGCCTCTCCTGATGTTCCAGACCTGACGCTCATTGACCTTCCCGGCATCGCCAGGGTGGCTGTAAAGGGACAACCAGAGAACATTGGAGACCAGATAAAGAGACTGATCCAGAAGTTCATCAAAAGACAAGAAACCATCAGCTTGGTGGTTGTTCCATGCAACGTGGACATAGCAACCACAGAGGCTTTGAAGATGGCACAGGAGGTGGATCCTGGTGGGGAGAGGACTCTGGGTATCTTGACCAAGCCCGACCTGGTGGACAAAGGCACAGAAGAGACAGTGGTTGCAACTGTCCATAATGAGGTCATCCCCCTGACGAAGGGCTACATGATTGTCCGGTGCAGGGGTCAGAAGGACATCACGGACAAGCTGTCCCTGACTGAAGcaatagaaagagagaaagccTTCTTTAAAAATCATGTGCAATTCCAGATCCTCTACGATGAAGGCTATGCCACTGTTCCTAAACTGGCAGAAAACCTCACCTTTGAGCTGGTGCATCATATCAAGAGATCGCTGCCTCAACTGGAAGAGCAGATAGAAAAGAAACTCAGGCAGACTCAGGCAGATCTCGACAAATATGGCAACGGACCCCCACCTGACGCAACTGAGAGACTCGGTTTCCTCATTGATAGAGTGACAGCATTTACATATGATGCTATCAGCCTCGCCGCAGGGGAGGAACTCAAATTTGGAGGCAGGCCTAATATCTTTGCCATACTCCGAAAAGAGTTTGCAGTATGGAAAGAGGTCATAGAGCGCTCTGGAACAACATTCAACTGGAATATTGAGAGAGAGGTGGCTCAGTATGAACGAAAGTACCGTGGAAGAGAACTGCCGGGGTTCATCAACTACAAGACCTTTGAGGGCATGGTCAAGGAGCAGATCAAACAGCTGGAAGGGCCTGCTGTCCTGAAACTCAAGGAAGTGGCAGAAATTGTGAAGAAAGAGTTGTTTGAGTTGGCACAGAGCAGCCTTGTTGGACTTCCTAACCTCATCAAAACAGCTCAGATGAAGATTGAAGCCATCAGAAAGGAGAGGGAGACTACAGCCGAGTCCATGCTGAGGACTCAGTTTAAGATGGAGTTGATTGTTTACACTCAGGACAGCACATACAGCAAGAAGTTAGGGAAGCGGAAGAGGGAAGATGATGTGACGGTCTTCAATGGTATAGCAGTGAAGACAAGCACCAGCAGCACTGACAGTGGGGCCACCCTGAAGGAGATGATTAAACACCTGAAATCCTATTACCAAATTGCTGGCCAGCGTCTGGCTGACCAGATCCCCCTGGTGATCCGCTACCAGATGTTGCAGGAGTCTGCCATCCAGCTGCAGAGGGAGATGCTGCAGATGCTTCAGGACAAGGAGAAAACCGAGGCCCTGCTTCAAGAGGACTCTGGCATAAAAACCAAGAGAATCAACCTTCAGAATCGCCTCAAGCGCCTGTCAAAGGCACGCATGCTGTTGACTGACTTCAGTATGAACATATACAACTTCAACACAACTCATTGCAATCCTTGAAACCAGATTGCTAATAGAAGAAGTTGCTGAATTAtcacattcttaaaaaaaaagttcctttgcagatttttttttcatgtttttgacATTAGTAATTCATTTTATTAAGTAAACTAAAATGTTTCATAAATGATTCCAGACTGTTACACCATATTCTCACTTTTCCATTCAATGTTATTGTTTCCTGAATGGCAtgccacatacatacataaggtccaaaacagagagagagagagagagagagagagagagagagagagagagagagagagaaaaaaaatatgtatgtttgttattgtggggttttttttgtaGGGTTTTCTCATTATGGGTTTTCTTGAGTAGTAGCTCCATTTTTGGCTTTCTTGAACTAACATCCTGCATGAAACCACAAAAGGTGCCTCTCAATCAGTCTGTCACAGACATGTTTGCACCGAGTACACCATTTACGTATTCAGCTTCACCGACCGTGTTGTCCATTGACGACCATTGACGTGTCCTAGTGAGCCATCATGCCAAGAGGGTTCAACATGCGGGATTTACGTACTCTTTTAAAGTATTTCCCCACaataactttatttaacatgatttaaCAACAGAGAATAGCATTAACGTAATATTAGGTAATAGCCCGACGGCCAATCCCaaacacatactatatattattCATTGGAGTGTGTGAGTTGTGAAAGAAACACTTAGCGAAGTTAGCTAATAAAGTTAAACGGTAGTGCTGgatgattaatcgaaaaataaTCGAAACTGAAATTCAGAGCCTTTAACCGACGTAATTTTACCAAGtcgattatttcggtcttttAATCCTATTAATATTTCCGTGCCGCCCACTGTGTGTTAATGTACTTTCCCCTTAAAACATATTACGGCCGCCGCGTGTGTAGTCACGTGACTCCGCCGGTTTACATTAAAACttaattaacttttttatttttatttcattgtaaaatCTACAGTTGTAGATTTAAGTTcagttgtttgaaatatttaataagCATTAATTgctatctgtgtgttttttccttATTTTAGAATCACAAAGATAGGATTATACACTCTTTCATTAGAAAAAATAACCCTGAACATATTTACAGTAGCCTAtaagaaaagatttttttttttttaataatcgtTCAATAATCGTAGTCAAGGTAACTTCTTCgattaattgtgattatgattttagccaaaatctTCCAGCCCTATTAAACAggttgattagttcagtgttaATGATGTCAGCTTTTAGCCCGTTGGACATGTGAGTCCAAAACTGTAAAAACGTGTCATAGATTGTAATGTAAACTTAACCTActcaaataaaactgaaaacata

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49800 lncRNA downstream 62594 9886362 ~ 9887416 (-) True G37125
TU49756 lncRNA downstream 66979 9880039 ~ 9883031 (-) True G37093
TU49727 lncRNA downstream 216632 9731681 ~ 9733378 (-) True G37073
TU49602 lncRNA downstream 719054 9230470 ~ 9230956 (-) True G37008
TU49601 lncRNA downstream 719611 9230061 ~ 9230399 (-) True G37007
TU49825 lncRNA upstream 34331 9991689 ~ 10029489 (-) True G37142
TU49834 lncRNA upstream 56369 10013727 ~ 10015053 (-) True G37145
TU49836 lncRNA upstream 58021 10015379 ~ 10016724 (-) True G37146
TU49849 lncRNA upstream 84889 10042247 ~ 10043822 (-) True G37158
TU49850 lncRNA upstream 86810 10044168 ~ 10044435 (-) True G37159
XM_039798555.1 mRNA downstream 4989 9935855 ~ 9945021 (-) True LOC120557887
XM_039798608.1 mRNA downstream 17552 9927026 ~ 9932458 (-) True LOC120557909
XM_039797832.1 mRNA downstream 30067 9888179 ~ 9919943 (-) True LOC120557475
XM_039796716.1 mRNA downstream 72128 9866949 ~ 9877882 (-) True slc2a9l1
XM_039796717.1 mRNA downstream 73997 9866949 ~ 9876013 (-) False slc2a9l1
XM_039799206.1 mRNA upstream 473 9957831 ~ 9962530 (-) False LOC120558233
XM_039799204.1 mRNA upstream 2890 9960248 ~ 9962543 (-) True LOC120558233
XM_039799205.1 mRNA upstream 2890 9960248 ~ 9961685 (-) False LOC120558233
XM_039799171.1 mRNA upstream 9724 9967082 ~ 9995755 (-) True LOC120558214
XM_039799172.1 mRNA upstream 9724 9967082 ~ 9974470 (-) False LOC120558214
TU49655 other downstream 554440 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 916343 8907782 ~ 9033667 (-) True LOC120558079
XR_005639053.1 other downstream 916351 8906439 ~ 9033659 (-) False LOC120558079
XR_005638890.1 other upstream 41639 9998997 ~ 10006173 (-) False LOC120556768
XR_005639075.1 other upstream 534932 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 536845 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 577596 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 975051 10932409 ~ 10943628 (-) False fam219aa

Expression Profile