RNA id: XM_039798617.1


Basic Information

Item Value
RNA id XM_039798617.1
length 3587
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC120557917
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24923839 ~ 24946743 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTGACGTCACCGGGCTGTTTCTCGCTCCCTTCCTGCTGCATCACAACAGCTCGAGTAGCAATAGTGACCGGGGGGACAGGATATTCACAGCCAATTCATTGATAGAATAACTCCGTTGACGTTGCAGCACTCAACAACATCCTAACACGGGGGTAACGGACAGGAACTGGTTGCAGTGCGATAACAACGCTTCAGCTGTTGGGATATGGCCAGGCCGGAACAGGTTCTGCTCTTGGAGCCTCAGCACGAACTGAAATTCCGAGGTCCATTCTCAGACGTGGTCACCACAAATCTCAAGCTCTCCAACCCTACAGACAGGAATGTGTGTTTCAAGGTGAAGACGACAGCGCCGCGTCGGTACTGTGTGCGGCCAAACAGTGGAATCATTGATGCGGGCACCTCAATCAACGTCTCAGTTATGCTGCAGCCTTTTGACTACGATCCCAATGAGAAGAGCAAACACAAGTTCATGGTCCAGTCCGTGCTAGCACCTCCTGACATGACTGACATGGAGGGAGTGTGGAAGGAGGCTAAGCCAGATGAGCTGATGGACTCCAAGCTGAGGTGTGTTTTTGACATGCCAGTGGAGAACGAAAAAACGCATGACATGGAGTCCAACAAGATGATGTCGTCCAGCTTGCTGAAGTCAGACTCCTCCACGCTGCCTGCGAAGTCAATGAGCTCCACCCTTGATGACGGAGAGGTCAAGAAAATCATGGAGGAATGTAAGAGGCTGCAGATGGAGGCTCAGAGGCTAcgggaagaaaacaaacagatcAGGGAGGATGATGGTCTTCGGATGAGGAAGAGTAACGTGATGTCATCTCAGCACTCATCCATTGGCATGAAGAAAGATGAGGGCTTGAGCGCCCGCACGATGCTCCTCATCGTGCTCTTCTTTGTGGTGGGCGTCATCGTGGGCAAGTTGGTCTTGTAGATGGCAGCAAATTTCGGTCGGCCGCAGCATGCTTTCAGGGGGatgaaaacaaacacaggatCTTGGATTTTGGATCAGAGATGCCATATCCGCTGGGTGGGGGGTGGTACTAGTTTTGATTCAGTCTGATTTATGTAAACAATTTCAAAGGTAATGTATGAGAaaataaagaggaagaaaaccGATTCATCATCTTATCAACAAACCTACTGTTACAGGTCTTGCCTCTACGTAATCATCACATAATCATTCTGGCCCTCTTTCCCAAAGTTGTATGTATACAGTGGCTGGTTCTTTGGGGTGGGGGGACAATGGAAACATGATTTAATGCTAGTGATCCAGACCAATTTTCTAACACCGACGAGGTAGTGTTGGTGCGACTGAGTCAGTTCGCAATTGTGTGAATGTCATTTTagtgtattgtttatttttcctAATGACGGAGGCCAGAGCCTATGTATAtgtaatccccccccccccctcccccactgtACAGTATATCCAGGTGTTCCTTCCAGCTAAACCCCCTTTAAGGAGGGGATTTACCAGAGAGATGATTCACACAGTCGGGGTTACACACAGGGCTATCAAACTGACTCCTGCAATCAGAGGCTTTGTAAAATCGGCTTGTCTTTGATTGTAGAACAACCTCTATCAGTGTATGAAACACTATACCGTAGGTATTTCCTTTCCtcgtgttgtttttattttcactctACCTTATTCCCGTCACCTGTCACTCAGTGCTCACCACGTTCCCAGTTGTCAGAGGGGGATGTTTGATTGCATGCGTTCACACAGTGTTGCATCTGGACTTTTGAATCTAATTTAATTGCTTTTATAACGGTGATTATAATATGTAATTTGGTTGTAGGTTTGCACAACTACATTttcagattttcattttctttctctcttttgtgttttgttgcaattttatgatttaaagtaatttttgttgttgttaaaggtTGAAGCATTTAGAAATATAGCAGCTACCAGAAATGAGCTCCATATTTGTAGGATTAGATCATTTTTGTAAATGTCCTCCAGATGAAAGGCTTGCCTTGTGACCTATTTGGGCAAGTTATTCTCAGGCCAAGATTgaggtacatacagtatatagcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcatgcatACATATAGCGAAAAACCACAAATGGACAGGAGTTGCATGTAGAGGCGACTGGCTATGTATTTCCCTTACAACAGCATCAACACCAAGGTTCCTGTTACAGTGTCCCCACAAAGGGACCTTGGTCTTTtccaactcttttttttttttttttcttcttttttctcataTTTTCCTACTGAGCCATACATTTGTTGAAGTTCTGTTTTGTTTGAGGCAAATGTATGTCAGAGATCAACTGAGTGTTTCAAGCTGCCTGCtccagctctctgctgctggtgagttttgttggtggtttGTTTCCCTCCACTGCAGGCCTGTGTtcagttttttgtgtttgttcagcATTTATCCGTTGCTTAGTAATGTTATATCCTCACTGCATTTGAAGTTGTGTTAATTTTTAATGCACTAAGATTAAGAGTGTCTCTCCTTTAATCTTCCTGCTGCatacaacagtttttttttctcaaggggtgggggtgggggtgtggggggggggcatacAGCCTAGCTTATATCCTTGAGGGGACCACATGATGACATTGTACTGTTCAAGagccgttgttttttttttttggtcaaaaataaactaaaacataATCTCAAATTGTTTCATCTACAAATTTGCTTGAGGGGAAAAGAACAGTGGAGAGTCATTCTATTTTGCAATATTTGAAGGAAAGAGAGCAGTTCATATTTGTATCCCACTGTATCCACATAAGATGCAGAAGTGCATTGCCTTTTGTTAAACTCAaaggaaaaatgacaaaatccccccccccctcaaaaaagaaaattctttTTCATGTTAAGTGGAGTGAAAGATGATGGATATGACTGATGGATAAGAAATTAAAATATACATGAGCTTGTGTTTCTACTGTATCTCTGTAAAATTGTTGGGTTGAGGATGACTTGCTGCTAAGAGGGAGGGCAGAGCAGACCTGAGCTACAGTCCCATCTTGGGTTATCAGACCTGGGTCAAATAGCACTTGCAGAAAATTCTTCTTGTTCAATGAGTCCTGGTTGGagtatattttacaaaaaaaaaaaatatatatatatatatatatatatatatatatacacaccagaATATACTGTTATGTGATTCATAATTTACCAATGTCCTACTCTGACGCAGTAATCCCCACCAATGTGGTACTCCAAGTAGGATTAAGCATACAATAATAATTACATGTGACTACTAATTGATCCAGGCCCGGTTGTAAAACGCACTACACTGACCTGTCCTGGAGTCTCTGACCGTCACCGTGATCAATGTAAGCAGTCGGCAAActgttttgtatgtatataaataaataaataagtctaTCTGAGAAGATTAATATTCCTAGTTCAAGTAGTCTCTCTGGTGTATAAGAACAACCCAACCTGGTTGGACTATGTAGCAtcttaataaattaaatgaataaagcACCTA

Function

GO:

id name namespace
GO:0036269 swimming behavior biological_process
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K10707 VAPB, ALS8; vesicle-associated membrane protein-associated protein B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55739 lncRNA upstream 1988 24921636 ~ 24921851 (+) True G41441
TU55651 lncRNA upstream 363521 24555525 ~ 24560318 (+) False bloc1s1
TU55650 lncRNA upstream 363521 24557660 ~ 24560318 (+) True bloc1s1
TU55653 lncRNA upstream 381686 24540909 ~ 24542153 (+) True G41375
TU55644 lncRNA upstream 400232 24521599 ~ 24523607 (+) True G41368
TU55833 lncRNA downstream 75715 25022458 ~ 25022749 (+) True G41518
XR_005639034.1 lncRNA downstream 106093 25052836 ~ 25065136 (+) True LOC120557911
TU55863 lncRNA downstream 138671 25085414 ~ 25085842 (+) True G41539
TU55836 lncRNA downstream 152544 25099287 ~ 25104953 (+) False LOC120558031
TU55837 lncRNA downstream 152544 25099287 ~ 25104953 (+) True LOC120558031
XM_039796536.1 mRNA upstream 2463 24909084 ~ 24921376 (+) True rab22a
XM_039796533.1 mRNA upstream 32425 24888607 ~ 24891414 (+) True LOC120556805
XM_039796531.1 mRNA upstream 37810 24866174 ~ 24886029 (+) True cers5
XM_039796532.1 mRNA upstream 37810 24866495 ~ 24886029 (+) False cers5
XM_039798070.1 mRNA upstream 59745 24859261 ~ 24864094 (+) True LOC120557580
XM_039798859.1 mRNA downstream 168175 25114918 ~ 25120366 (+) True LOC120558032
XM_039796413.1 mRNA downstream 261413 25208156 ~ 25310527 (+) True slc12a5a
XM_039796415.1 mRNA downstream 376651 25323394 ~ 25329667 (+) True capza1a
XM_039797941.1 mRNA downstream 384405 25331148 ~ 25345776 (+) True mov10a
XM_039799057.1 mRNA downstream 458737 25405480 ~ 25523601 (+) True tafa3a
TU55524 other upstream 1162888 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 1162888 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 2932040 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 4775149 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 5000290 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 1321859 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 1595764 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 1595764 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 1706517 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 4293670 29240413 ~ 29242253 (+) True G42449

Expression Profile