RNA id: XM_039798628.1


Basic Information

Item Value
RNA id XM_039798628.1
length 2641
RNA type mRNA
GC content 0.46
exon number 20
gene id dnai1.2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10944188 ~ 10966216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGGCTGGTTGTCTTGGCAACCtatatacagcagcagtcagctGCAGAAAAGCGAGACTTCTGTTGCTAACGTTAATTATTTAAaggtttcttttttactttgtgtCGTTGTGCTCTATTTTGTCAAGGGTAAATAGCCTAATTGTTGGTCAAGTCATTAAACCGCACTCTTTTCGCAATGCCAGTGCCTAACAACGTCGCAGCATCAATGAGAAAGGGCTCAACTGTTCAGAAGGGAACTTTACCTGGTGCGAAGTCAACCAAAGCTGCAAGTAAGAAAAAGgatgaggaagagggagtGGATACGGGTGATGGATTGGACGAGTGGTCTGGGAAAGCACTTATTAAGCCTGCAGAACAACTGGAGCTCACTGAGGCTGAGCTGAAAGAGGAAACCACAAGGATCCTGACTGCAAACAACCCACATGCCCCCCAAAATATTGTCCGCTACAGCTTTAAGGAACGTTCCTACAAGCCTACCAGTGTTGTGGATCAGATGGCTGTTCACTTTGTGTTGGAGGGCAGCCTCCTGCATCAAGACTCTGATGAGGCTCGTAGACTGAGGGCCAAGGAGGGTCTCCCTGAGGAGACTCCGACTGTCGACACTGGAACAGAACCTGATGAGGAGAAACCAGAAACCCCgGCAACACCCATAGAGGATGGAGGGGAGGAAGCTGGAGAGGAGGACAGACCAGACAGTGTTGCATCCAAAACTGACAGGAAGGAGCCAAAAGTTTCTAACCAGTTCAACTTTAGTGAGAGGGCATCCCAGACCCTCAATAACCCACTGAGGGAAAGAAGCTGCCAGACTGAACCTCCTCCACGCAGCAACTTCTCTGAAACCGTTAATCAGTGGGAGATCTATGATGCCTACGTGGAGGAGCTCCAGcagcaagaaaaaaataaagagaagcagaaagctgTAGCATCAAAGAACGATAATGACAAAAGCAAGAAGAAGACGGTGCTGATGGAGACTCAGAATGATGACATTTCCAAAGTGGGAAAGGCATCCAAGATCTTTGAACGAATGGTCAATCAGAATACTTTTGATGACATAGCACAAGATTTCAAATACTTTGAGGATGCATCTGATGAGTTCAGGGACCAGGAGGGCACCCTTCTCCCTTTGTGGAAGTTTCAATATGACAAAGCCAAAAGACTGTCTGTCACTGCCCTCTGCTGGAACAAGAAATATCAGGATCTTTTTGCAGTGGGGATGGGATCATACGACTTCAGTAAGCAGGGGCGTGGCATGCTTGTCTATTACTCATTGAAGAACTCTGCCTTCCCAGAGTTCATCTACCCCACAGATTCTGGCGTTCTATGCCTTGACATCCATGAGCAGCATTCATACCTGGTGGCGGTAGGCTTCTATGACGGCTGTGTGGCTGTCTACAACTTGAAAGAGGAGGGACTGGAACCTCTGTATAAGAGTACAGCAAAGACTGGCAAGCACACAGACCCCGTCTGGCAGgtGCGCTGGCAGAACGATGACATGGACAATAACCACAATTTCTATTCTGTGTCATCTGATGGCCGAGTTGTGTCCTGGACACTCGTCAAGAATGAGCTGGTCTTTACAGACATTATCAGACTGTCACTAAATGGTGCTGTCTCTGATGGGCCAGAGGGTGCAGAGCAGCCTGGCATCGCCTGTGGTACCTCGTTTGACTTTCATAAACAGATCGACTATCTCTTCCTAGTTGGCACCGAGGAGGGGAAAATACACAAGTGCTCCAAGACCTACTCAAGCCAGTTCCTGGAAACATATGATGCCCACAGCATGGCAGTGGATGCTGTAAAGTGGAACCACTTCCACCCAAAGGTTTTCATCTCTTGCAGTTCAGACTGGACCGTCAAGATCTGGGACCATGCCATCAAcACTCCAATGTTCACTTTTGATCTGAATGCAGCTGTTGGTGATGTTGCCTGGTCTCCATACTCCTCCACTGTATTCGCTGCTGTCACTACAGATGGAAAAGTTCATGTCTTTGACCTCAACATCAACAAATATGAGTCCATCTGCCACCAGCAAGTGGTGGCGAAAAAGAAGACCAAGCTGACTCACATTGAGTTTAATCCCATCTATCCTATCCTCATAGTGGGCGATGACCGAGGCTATGTCAGCAGCCTCAAACTCTCCCCTAACCTCCGCAAGAAACCCAAGtgcaaGAAAGGTCAGGAGCAGCCTAAGGGTTCAGAAGTGGAAATAGCCAAGATGGAGAAGCTCCTAAGTCTGCTAAGGGAACCAGAACAAAGCACAGTTTAACGCAACCACCGCATCTCCCCAACACGGCAACATGGTACAATCTTTTATTCTctttaatgaaagaaaaaaaaaagtcttctacTCAGTGTTTGCAACAATAAACAGCATCAACATAACAAGAAAGCTATTTGTAGatgtttattaaaaatgttttcgTCTGATCTCTCttaaatgtacaatatgtaattttctctCTCCCAATCGAAACGGATGTGAACACAGACTTTTGATGTTTTCAAAGTTGCGTGGGATCATGGGAGTTGTTGTTAACCACCATTGCCGATTAAAATGTATCTGTTCTCGGACGAGTTAATGTATTTAAGTTTTACTCACGTTATGTTCATTAaatgtttattcatgtcatgtCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50154 lncRNA upstream 562 10936683 ~ 10943626 (+) True G37383
XR_005638986.1 lncRNA upstream 14801 10928504 ~ 10929387 (+) False LOC120557560
TU50148 lncRNA upstream 14804 10928477 ~ 10929384 (+) True LOC120557560
TU50139 lncRNA upstream 28389 10910297 ~ 10915799 (+) True G37370
TU50136 lncRNA upstream 146764 10796979 ~ 10797424 (+) True G37367
TU50183 lncRNA downstream 31674 10997230 ~ 11012909 (+) False G37397
TU50185 lncRNA downstream 31674 10997230 ~ 10998833 (+) True G37397
TU50343 lncRNA downstream 379184 11344740 ~ 11345059 (+) True G37521
TU50344 lncRNA downstream 381530 11347086 ~ 11347671 (+) True G37522
TU50345 lncRNA downstream 383580 11349136 ~ 11349368 (+) True G37523
XM_039797459.1 mRNA upstream 390807 10536453 ~ 10553381 (+) True kiaa1328
XM_039797461.1 mRNA upstream 412101 10528380 ~ 10532087 (+) False aqp7
XM_039797460.1 mRNA upstream 412101 10528383 ~ 10532087 (+) True aqp7
XM_039798049.1 mRNA upstream 441756 10499573 ~ 10502432 (+) True mlnl
XM_039798042.1 mRNA upstream 454138 10469629 ~ 10490050 (+) True ubap2a
XM_039796291.1 mRNA downstream 63239 11028795 ~ 11050816 (+) True LOC120556651
XM_039798012.1 mRNA downstream 85554 11051110 ~ 11053203 (+) True LOC120557557
XM_039798353.1 mRNA downstream 88634 11054190 ~ 11098050 (+) False cita
XM_039798352.1 mRNA downstream 88634 11054190 ~ 11098050 (+) True cita
XM_039798354.1 mRNA downstream 88634 11054190 ~ 11098050 (+) False cita
TU49895 other upstream 634192 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2121457 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 2121880 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 2127791 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 2136500 8807616 ~ 8807688 (+) True trnar-acg_13
TU50184 other downstream 31674 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 386522 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 425183 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 814622 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1287510 12253066 ~ 12254974 (+) True G37714

Expression Profile