RNA id: XM_039798639.1


Basic Information

Item Value
RNA id XM_039798639.1
length 2022
RNA type mRNA
GC content 0.56
exon number 13
gene id rbpjl
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38734167 ~ 38784058 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCAGGgtcagcagacacagagctcCGAGCTGTCTCATCTTCATCCTGATGATACCGATCTAACAGCTGGACTCCGGAGCTGGAACTGGATCAAACTGTGGCGCAGAGTGACGATGGACCGGAGCAACACCCCCTCTTAATGTCAGCAGAGCCGATCATGGACGAGTTGGGCATCGCAGATCAAGGCAGGAGAGAAACCTCGAACACCCAGCCAGGATTCTCCCAGGCGGACCTCGCTCTCTTTtacccccctcctctctccccagacccgggcagcacgCTGACTCACCTGGGGACGCTGCTGGCCGGACACGACGCGCCGAGGACCGGCGGATGGGACAGGAGCCTGGACCTGGGGTTTCAAGGCTCCCAGTTACTGGGACCAACAAGGGAACCAGTAAGAGAAGCTCACGCAGACCAGAGTGTCACCATCCTGCACGCCAAGGTCGCTCAGAAGTCCTACGGCACCGAGAAAAGGTTCTTCTGCCCACCTCCTTGTGTTTACATCAGCGGCCATGGATGGAAAGTCATGCAGGACCATCTGAAAGCGGCTGGCTGCGGAGACTCTGTGTATCGAGTGTGTGGTTACATGTGTCTGGACAGCTCCAGTCAGTCTCAGGCCGACACATTCAAACTGGTCTTCGATGAGCAGCCAAACTCCAGGATGTTTGCCTGTGCCAAGTCCCTGTTCATCTCTGACCAGGACAAGAGGAAACACTTCTGCCTGTTGCTGCGACTCTTCTTGGGCAACAGACAGGAAGTGGGTTCGTTCCAGAGCCGGATGATCAAAGTCATCTCCAAACCCTCCCAGAAGAGACAGTCCATGAAGAACGCCGACCTGTGTATCTCATCGTGCTCCAGAGTAGCTTTGTTCAACCGTTTACGCTCGCAGACGGTCAGCACTCGTTACCTCTCAGTGGACAGAGGAGCTTTTATAGCCAGCGCCAGACAGTGGACCGCCTTCACCATCAccctggtgcaGGAGCAGCATGCTGACCGAAGGGACTTTGTGCCGAGCGAGGGCTTCATCTGTTACGGCCGTGTGGTCCAGTTAGTGTGCACTGAGTCTGGAGTCGCTCTGCCACTCATGGTGATCCGTAAGGTCAACAAGCAGCACGCCATCTTGGATGTGGACGAGCCGGTCTCTCAGCTCCACAAGTGCGCCTTCCAGTTCCGAGACGACCCACACTCCTACCTGTGTTTATCCAACGACACCATCATACAGCACCAGgcCCCGTCCAGCGGCAGAGACTCGGGCAGAGTGGTGCTGAACGACGGGTCCTGCTGGACCATCATCGGAGTGGAAGCGGTGGAATTCACCTTTAATCAGGGTCCCGCCTGCATCCAGACCCCAGTTACTCCTTTTCCTGTTCTGACCGGGTTAGAGgtgaatggtggAGGGCACGTTGCCATGTTGGAGATCCAGGGAGACAACCTCAGCCCTCATCTCAAAGTGTGGTTCGGAAACAGCGAGGCGGAGACAATGTTCAAGTCTCCCAAATCTCTGCTCTGCGTCGTCCCCGACGTCTCCGCGTTCAGCGACGGCTGGCGCTGTCTGCGGCGCGTCATCACCGTCCCTCTGTGTCTCATCCGATCGGACGGCCTGATCTATCGCACGGCCTTCAGTTTCACCTACACCCCCGAGCTCCAGCCGCCGCCGGCATCCATCCGGGGGGCGTCAGgaggagggaaaagagagggagggatggagggggaCGAGCACGACGACAGCCTGTTAGAGACCATCCACCAGGAGTTCACCAGAGCCAACTTCCACCTCTTCATGCAGAGTTAGCTCATTGAGTCCTCAGGTGAATGTTGGGAGCAAAAGTCTGATTATAAGCAAGAAACGGTTTTGGATGAACGCTGGTCTCGTGTCAATGAACTGTGTGCAACTTTTGCCCCATTCTGAACTACCGGAATATCAAGGTTTATTTATTGTCACGGATAGGGTTGCACAATGAAATTCAGTTGTAGTCCCTTTATGttacacaattaaaataaaaacaaacagaactgTG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59542 lncRNA upstream 20344 38709982 ~ 38713823 (+) True G44454
TU59539 lncRNA upstream 50706 38683161 ~ 38683461 (+) True G44451
TU59537 lncRNA upstream 51076 38682795 ~ 38683091 (+) True G44449
TU59526 lncRNA upstream 113140 38620555 ~ 38621027 (+) True G44438
TU59522 lncRNA upstream 162026 38571897 ~ 38572141 (+) True G44434
XR_005638998.1 lncRNA downstream 22388 38806446 ~ 38813444 (+) True LOC120557691
TU59576 lncRNA downstream 22411 38806469 ~ 38812630 (+) False LOC120557691
TU59588 lncRNA downstream 40617 38824675 ~ 38825019 (+) True G44488
TU59589 lncRNA downstream 56976 38841034 ~ 38841233 (+) True G44489
TU59600 lncRNA downstream 204010 38988068 ~ 38988533 (+) True G44499
XM_039798178.1 mRNA upstream 324893 38366059 ~ 38409274 (+) True LOC120557646
XM_039797053.1 mRNA upstream 386924 38346807 ~ 38347243 (+) True LOC120557037
XM_039797043.1 mRNA upstream 389916 38342443 ~ 38344251 (+) True LOC120557028
XM_039797054.1 mRNA upstream 408177 38325543 ~ 38325990 (+) True LOC120557038
XM_039797051.1 mRNA upstream 421680 38311854 ~ 38312487 (+) True LOC120557035
XM_039798209.1 mRNA downstream 73109 38857167 ~ 38886428 (+) True LOC120557663
XM_039798228.1 mRNA downstream 113302 38897360 ~ 38913530 (+) False LOC120557676
XM_039798226.1 mRNA downstream 113303 38897361 ~ 38913530 (+) True LOC120557676
XM_039798213.1 mRNA downstream 116514 38900572 ~ 38903056 (+) False LOC120557667
XM_039797149.1 mRNA downstream 157514 38941572 ~ 38942817 (+) True LOC120557116
TU59524 other upstream 121196 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 566949 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2771557 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 3068126 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 3247932 35463772 ~ 35486235 (+) True LOC120556915
XR_005638991.1 other downstream 116514 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 169060 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1029902 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1372150 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 1696618 40480676 ~ 40506570 (+) True G44690

Expression Profile