RNA id: XM_039798645.1


Basic Information

Item Value
RNA id XM_039798645.1
length 3101
RNA type mRNA
GC content 0.46
exon number 18
gene id prkcda
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16016979 ~ 16034962 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCGAAAAGCCTCTGCGAACGCGCGCTAACATACACTTCCTCAATCGACGGAATCCCAGAGCGAAAAacgagaggaagagaaagagcaaCTTTCGTCGTGCTGCGGTGATAAAGAAACAGCACAGAGTTTGCAGGACGAGCAGGTGACGTTGGTACTTGTCACCATGGCTCCTTTCTTGAGGATCGCCTTTAACTCATACGACTTGGGCCTCCTGCTTCCTCTGGCCGACCCGCCTTTCTGTGCAATCAAGTTGAAGGAGGCCTTGACAACTGATAGAGGTAAGACCCTGGTTCAGCGGAAACCCACCATGTACCCGGCTTGGAAGGCCACTTTTGATGCTCACATCTATGAGGGTCGTGTGTTGGAGGTACTGCTGATGAAGACAGCAGAGGAGCCGCTGGCTGAGGTCACCGTTGGAGTGTCTGTCCTTGCTGAGCGCTGCAAGAAAGCCAACGGGCGCGCTGAGTTCTGGgtgGATCTTCATCCTTCTGGGAAAGTGATGATGGCAGTGCAGTATTTTCTAGAGGAAGTGGATACagAGAGTAAGCAGGCTGGCAAGGAGGAGGAGGCTCCTACCCTGAACCGTAGACGAGGGGCCATCAAGCAGGCCAAGATCCACTTCATAAAGAACCATGAGTTCATTGCCACGTTCTTCAGACAGCCCACTTTTTGCTCCGTGTGCAGAGAATTTGTCTGGGGACTCAACAAGCAAGGCTATAAATGCAGACAATGCAATGCAGCCATCCACAAGAAATGCATAGACAAAATCATCGGCAGATGTACCGGTACTGCTGCCAACAGTCGGGATACTGTGTTCCAGAAGGAGCGCTTTAAAATTGACATGCCGCACCGTTTTAAGACCAACAACTATATGAGTCCCACCTTCTGCGACCACTGTGGAAGTCTCCTGTGGGGTCTTGTCAAACAAGGCCTCAAGTGTGAAGATTGTGCCATGAATGTCCATCACAAGTGTCAGGATAAAGTAGCCAACCTTTGTGGTATCAACCAGAAACTACTAGCTGAAGCACTCACACAAGTCAGCCAGAAATCGTCCACCCGCCGTTCAGATCCAAACATGCCTGATCTGCCTGATATTGGAATCTACGATGAAGTTAGCAAGCTTGCTGGACTGAATATCAATGATGGATCTCCCTATGGCAGACTGTGGGAGGGGTCCAACCCACGGCCTCAGTCTCGTATAACTCATTTGACCCGCATCAACGTGGACAACTTTGTCTTCCACAAGGTCTTGGGAAAAGGCAGCTTTGGCAAGGTTCTCCTGGCAGAGCTGAAGGGTAGTGGAGAGTACTTTGCAGTAAAGGCTCTAAAGAAAGATGTAGTGCTGATGGATGACGATGTGGAGTGCACTATGGTAGAGAAGAGGGTCTTGGCTTTAGCCTGGGATAACCCCTTCCTCACACATCTTTACTCCACCTTCCATACCAAGGAGCATCTGTTCTTTGTGATGGAGTATCTGAACGGAGGAGACTTGATGTTTCATATTCAGGAGAAAGGGCGCTTTGAACTCTACAGAGCCACGTTCTACTCTGCTGAGATCATTTGTGGTCTTCAGTTCTTACATACCAAAGGGATCATCTACAGAGATCTTAAGTTAGACAATGTGATGCTGGACCATGAGGGACACATAAAGATCGCTGACTTCGGCATGTGCAAGGAGAACGTGTTTGGAGAGAATCGTGCTACAACTTTCTGCGGTACTCCTGACTATATCGCCCCAGAGATCCTGCTGGGACAGAAATACTCATTCTCTGTTGACTGGTGGTCATTTGGGGTGTTGCTTTACGAAATGCTGGTTGGTCAGTCGCCTTTCCATGGAGATGATGAGGATGAGCTGTTTGAGTCCATCCGCATGGATACTCCCCACTATCCTCGTTGGATCAACAAGGAGGCCAAGGACCTGCTTGAGCAGTTGTTCGAAAGAGACCCCACTCGCAGGCTTGGGATCGTGGGTAATGTCCGTTTACAGACGTTCTTCAAGAACATCAACTGGCAGGCCTTGGAGAATAGAGAGATTGAACCCCCCTTCAAACCCAAAGTGAAAGCACCAAATGATTGCAGCAACTTTGATCGGGAGTTCCTCAGTGAGAAGCCTCGTCTCTCCTACAGCGATAAGAACTTCATAGACTCCATGGATCAGGCGGCATTCGCTGGCTTTTCATTCATCAACCCTAAGATGGAGCAGCTTTTAGAAAAGAGAGTGTTGTGATGACAGTCAGACCTGGGTTACATCTCTACCGCTTAAGGACAGTTCCCTTATTCTGTCACCTTGTTAAACTTACAAATGAATGAGCTGTTCCACAATCAGTATTCGTGTGACCTTATTTTAAGCACAAACCATTCTCCTTGGGTACGTGTAGAAATGATAAGCGTAGAAACGGGCTCTTGTACTGTACATATTGAcagtattgtgtttgtgtgcatgcttATTATTTGTCTAGGTTGTGAAAGCCTGTATGAGTAATAATATAGGGGCGGGAGGTTGAAAATCCTTACATTTCACTTGACGTCACCGCTACCATCTGCAGCTATTTTGTGTCCCTTTTTGTAACATTTAATTCAACCCAACTGGGAATGAAATAGTATGAAGAGGGAAAGAAACCTATAGGAATAAATTATGCTGTATACTTCAAATGtagattttttgtgtgtgaatgagttGACTGCATGTATAGAAATCTCAGACCAACAAAAACTTATTTGTCTTTAAATATAGATTAATAATGAACGTTATCTGTCTTTGGAACATCTGAATTCTTGCCTTTGACTGAATGAATCATGTCTGGCTGATAAAGAAGAACTTGTGGTGATTGGCTTTCCGATCCCATATAAAGAACTAATTTGAACAGATTAACAGCTGTTCTCAGCTGAATTGAAAGGTCCTATCTGTGTACAGAGGAGGCAGTCGGTGCAAAAGGTCAAGTAAAGGTACGTGACTTCAAACAGTAAGTTCGGAGTCACTGAAACGCTGTATATAGacaatgtatatgtatattgctGTAACATGTATATTTGTTCGCTAAggatgtactttttttttttatgtctccaTCTTTTAcatctgattaaaaaaacatcaac

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K06068 PRKCD; novel protein kinase C delta type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52310 lncRNA upstream 31884 15984624 ~ 15985096 (+) True G38966
TU52303 lncRNA upstream 79896 15936341 ~ 15937084 (+) False crbn
TU52300 lncRNA upstream 95358 15919430 ~ 15921622 (+) False LOC120557201
XR_005638940.1 lncRNA upstream 95364 15919385 ~ 15921616 (+) True LOC120557201
TU52290 lncRNA upstream 102079 15914539 ~ 15914901 (+) True G38948
TU52394 lncRNA downstream 121751 16156713 ~ 16158362 (+) True LOC120557902
TU52395 lncRNA downstream 121751 16156713 ~ 16158362 (+) False LOC120557902
TU52396 lncRNA downstream 121751 16156713 ~ 16158362 (+) False LOC120557902
TU52400 lncRNA downstream 121751 16156713 ~ 16158362 (+) False LOC120557902
TU52402 lncRNA downstream 121751 16156713 ~ 16158362 (+) False LOC120557902
XM_039798969.1 mRNA upstream 5474 15991734 ~ 16011506 (+) True LOC120558102
XM_039798971.1 mRNA upstream 5474 15991734 ~ 16011506 (+) False LOC120558102
XM_039798970.1 mRNA upstream 5474 15991734 ~ 16011506 (+) False LOC120558102
XM_039796380.1 mRNA upstream 42743 15965402 ~ 15974237 (+) True ccdc174
XM_039798755.1 mRNA upstream 56700 15952560 ~ 15960280 (+) True tatdn2
XM_039798370.1 mRNA downstream 1012 16035974 ~ 16039274 (+) True rft1
XM_039798371.1 mRNA downstream 4851 16039813 ~ 16041213 (+) True mustn1a
XM_039796384.1 mRNA downstream 14716 16049678 ~ 16060330 (+) True eefsec
XM_039798595.1 mRNA downstream 114163 16149125 ~ 16157509 (+) False LOC120557902
XM_039798001.1 mRNA downstream 126998 16161960 ~ 16167138 (+) True arpc4
TU52306 other upstream 50873 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 369129 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1142521 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1200544 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1679220 14335389 ~ 14337760 (+) True LOC120557952
TU52330 other downstream 14943 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 398276 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 482574 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1077151 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 1158259 17193221 ~ 17198217 (+) True srsf3b

Expression Profile