RNA id: XM_039798648.1


Basic Information

Item Value
RNA id XM_039798648.1
length 5460
RNA type mRNA
GC content 0.45
exon number 3
gene id si:ch211-159e12.5
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14339648 ~ 14345605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTGTTTGGACTTCATTAGATCTCATATCACCTCATGAGCAGCAAGGACAATAATCTGAAAACAGCAATTAAAAAGATCTGTGTATGAAAACAACAGATGGAGTTCTGGCCCGAGAATCAGGGGCAGTCCCCTCTATACTCCAAATTTGCTACCATGACAGACATCAGGTACCCCATTATCCACTGTACTATGGTGAGCAGCAGGATCAAGGCAGGGAGTCCAGTTACTGGACTGTACCAGGCTCAAGAACAGGAGGGGCACCACAGGAGTACACCAACTGGATGGACCAAGAGCTGACTGCCCCTACTTCTTCTCACTTCCCTTTTATTCTAGACCGTCACGTTCAGCAGCACCAGGACCTGGGAGACTATCAGCCGCATGAAGCCAGAGACAGGGAGTGGATAGCAGCTCAGCGAGCAGCGAGGGAATATGAGAGAGGATTTCTGAGGGAGGCGTGGCAGAGGAGGTGGGAGCCCTGTGGTCCTGTTCGCTACAACAGGGACATTTCTGCCAAGAGGAGCGACAGCAGCTATCGAGAGCTGGAGGCTTGGGCAGCTCGATACAGCCATTCACTTCCAAGGAGGAGACGTATAGAGGCAGAGTTGAGGGGAGCTTCTAAGGGGCTGTTGGAGAGCAGCAGGGCTCCAGAGAGGGACAGCAGGAGTGGGACAGATCCTCGAGTGGTAGCACTGCAACAAGTCAGACAATCTGCAAACATCAGAGAATCAGGACTGTGGGATAGAGGGGGCAGACAGCAAGCGCCAACCTATTATTCATCACAAACTCCTGCCACAGACACAAGCCACATGTTGGACATCAAAGAAAAGACCGGCTACCAACGGAGGATGTTCAGCCAACCTCCTGGCTATATTGCTCCTCCTCCCTATGACAACTCACATAAAGGTTCACCTGTATTGCATCACTGTGACACCAGTTGGGAGCAAGAAGGTAAGAGACAAGCCTACTGGTCTCAGCCCGCACCCAGAAAGCACGATGTCTCTGTAGACCTGCAGGATcacagaaaaggagagaaggaTGAGCTTACAAAATCAGATGGAAATCAAAGAAGCTTCCCAGATCACAGACGACAGGAATCAGATGCTTTACATGCAAGCAGTCCTTTTAGTATCCAGGAAACACACCTACAGTATGAGGGTATGATGTATCTTAAACAACCACAAGTGTTACAAGTAGTtgagaataaaaagacaaatgaGGAACCATCCTCAAAAGTCATTGAAGGAAGGAAGTTcaggttaaacaaaaagacaggtGGGATGACCATATTCTGCTTGGTGTCTCGAATAGCAGGCACCACAGAAACCCCATCTTTGCCACTTTGTACCTCGCAAACAAACATTCAAAACACAGAATTAGGAGGCGTTTCTAAAGGTCTAAGGGACAGTAGTGGCAGtaatcaaacacacaaacttGCAGATGAGGTAGATGGCAGAGAGCCAACACCCACAGAGCAGTCAAATACTTCTGATGCGAGAAATGTCAAAGCCAAACAGGAGACACCAACCTGCGTAGAAAGTGAGATGCTTGAGGATAATATATTGAACAAAGCAGAGACAGATGGTGTCGTCCCagaaaaattaaatacaaatgATGCTGATTCTACATGTGGGAGACAAGTTGCGGAGTCAGTGCAACCGGTGTCAGTTAAATACCCTTTGTGGAGGGAGCCTAGTATCACAAGCAGATCTGAAACTAAGAGTTCATCCAAATATTTGAAAGCAAATGGTGAGGAAAGAGAATCAGATGGTGTGCACAAGCAAGAGGACTCGAGTAAAGTTAATCCAACTGATGTTGAAGTAAGGAGACTGGACACCGAGACAGACACAGAATCTGAAGACAGTAAGGTTCTACTGGTTATCGACACAACCTGTGTTGTTGTTAAAATGGAGCTGATTCCATCACCCAAGAAAGAGCATGTTCACTATTTACACACCGAACACAGTCCACTTGATATTCAATCGACCGGCTCTCCTGAATGTGTCCAATCAAACAGTCAGCTGAATCAGGATGCGACAACTGACCAAAACTCAGAAAGCAACCCCTTCCAAATTAATGGAAGGTCTGAAACCAAACTACACTCAGATCTCATAGAGAAAAAGGCACCTGAGGGAGAAAGTCAAATCTCTTCCTTCTGCACATCCTCATCCTCAGTTTCTGAAAGGGAAACGTTGGAGGAGCGTGCTGAAAGGATCTTAGGAATCCCTCTAGATGACTGCATTACTAAGCAGCAACCTGAAGATGCAACGTTGCTTCTTGACTTGTGTGTGGAAGACCAGGAGGTTGAACCATCTCCAGTTAAAGACAACAACGTTGATGATGCAGTTGAACAAATCCCAGAGGACACAAAAGAAGAGGAACAGTCACAGAACCAGTTAGAGGTTGGCCAAACTGAGGAGGCTGTGTGTTCGCAAGAGAATGATGATGCCAAAGATCAGGCAGCAAATGAAGGTGCTGAGGATTTTGCAGGGCTTCAGGTTCAGGTGTCTAATCTGTCTGAAGAGAATGACTCCCAACTCGAAACTGACATCAAACCTTCACCTGAAATTGAAATGACTGAGGATCCTCTGCTTAAACCCGCTAGTGAAGAGAGTACAACTCAGCAGGAAGAAAATCAGCCTATTGAAAATGATACCTCCTCTCACATTCCCTCTAAGGGTCTCAGTCCACCCAGCAACCTCTCTTATACTTCTTCGCTTTCACCCTCCCCAGACTGTGAAGTGTCGAACCCTGCTCTTTCTCTCATGCTCTCATCCTCTGATCTTACCCCTCTCATGCATATTTCAGAATCAAACATAGAGGAAGGTCCTGATCCTGAGTTGACTGCCCTCAATTCCACAGAAATCCTAGCTCTTCACCCTGAAACCTCATCTCTGCCTTACACCCCATCACCTCTTCCTCCAGGATCTAATGACTTTTCCCCAAGCTCCATTCCCCATACAGACCATTCCCCAAGCCCATCTCCTCTTGATTTAATAGATAAAACTGTAGAAGCTGTGTTCAGTGTTGAGGACCAGGTAAAAGAGGATGACACATCACAGCTAATAAACGAAGAGATCAGTGACTCCTTTGAGGACCCTGCCAAAGATATGACAGAGGAGCTGTTATTACAGCAACAATTTGAAAGTGGCCAACCAGATGATGATGCTTGTGTGAATAAGAGCAATGTCACAGATGAGCAACAAACAGAAGAAGCCGATAAGGATCCTACAGGCCACACTATGGAACAGATTCTTAAAATATCCAAAGAAAATGCCATGGAGGTTGATATTCTGCAACAACAACTTGAATGTGCCCTAGCAGACGATGTTACTAGTGTTAAAGAGAGTCATATGACTGAAGAGCAGCTACCAAAAGAACCCGATGATGATCCTACAGGTCTTTTGGAACAGACAATATCCCAACAATGCGTGACTGACAGTCAAACTCAAACAGAGGTCAACATTTTGCAGCAACAATTTGATAATGGCCAAGAAGAGGTTGCTTTTCTAAAAGAGAGTTATATGACTGAGGAGCAATCACAAAAAAGAGCTGATGAGGAGCCTACAGGTCTTATGGAACAGACACTATCCCCAGAAAACGCTACAGAATCTCAAACTCAAACAGAAGTCAACATTTTGCAGCAACGATTTGATAATGAGGAGCAATCACAAAATGAAGCTGATGTGGAGCCTACAGGTCTTATGGAACAGACACTATCCCCAGAAAACGCTACAGACTCTCAAACTCAAACAGAGGTCAACATTTTGCAGCAACAATTTGATAATGAGGAGCAATCACAAAATGAAGCTGATGAGGAGCCTACAGGTCTTATGGAACAGACACTATCCCCAGAAAACGCTACAGAATCTCAAACTCAAACAGAAGTCAACATTTTGCAGCAACGATTTGATAATGAGGAGCAATCACAAAATGGAGCTGATGAGGAGCCTACAGGTCTTATGGAACAGACACTATCCCCAGAAAACGCTACAGACTCTCAAACTCAAATAGAGATCAACATTTTGCAGGACACTGAACCACAGACTGAACCCTCTAACTCTTCTCCTCCCTCAACTTCAGATTCAGAATGCGAGGTGTCTCAATCACCAGATGTGCGCTCACCCTCCAAGCTTTCTTCTCGGCGACACACATCAAACGAGTCAGATGCAGAGTTCATCACTCTTTTGGAAATGGACTCAGTCTGTCCCCCAGCTCTAAATCCTGATGCTGCTTCGGCTGCTGGCATCCCAGAAActgtccctcctcctcttcatctggACTCTTGTGAAGAATCCCTTCAGTTCTCATCTTCCTCTTGTACGGATTCACCCACAGAGCTGCCTTCCAGCTCTTCAACTCCTCCACTGCAAGAGGGAAGTGGAAGTGTTGACCCTGACTCAACCCTAAAAGAAGAGCCCCAGTATCCCAAGTCCCTGTGGGATGCAGTTAATCGCATTAGGAAACATACAGCGCCTGACTCTgagaatgaggaggaggaagtgagTGAGCTGTGGGATCCAGAGAGTGTAGTGGAGGACTTGGATGTGATAGTGGGCATATATTCTGAGAGGATAGTCTTTGATGGAGCAGGGCAACAGGACGTTTCAGCAGAAGGAAGTGTTGAGGATGTAGAAGTGGGACAAATCCAGGCGGATCCATGCCATGAAGAGCCTTTACATGCTGAAGAAGACACACTGTCATGCAGCAGCACCTGCAGCCAAGGCTCTGGGGACACCGTTATTGTAGCAGATGAGGACGAGGTTGAGGAATCTCCACCTGATGCCGGGATGGAGAGCAAGGCTGAGGGGGAGCGATGCTTCTCTGCTAAAGTAAAAGATGAGACTGCAGCTAAGGAAGAGGGAGATAACGATGGAGACGAGAGCGTCACAAATAAGTCTAGTCAGAGGGAGGAGTGCCTGGTTGAGATGGCAAATATAACAATGCAGGCAGTGGAAATGACAGAAACAGAGCcaggagaaaaggaggaggtgGTTTCCGTGCCCTCCGAGGTCTCTGTTGAAGGGATGATTGAAAGTATGTCTTTAAAATAATTGGATAAACAAGGAACACTAGTCTGATGTTGAGCTGAACATCTAACAACTCTGTACCATCTACAGTTGTATTGTGCCTGATAAGGAATGAAAGTCATTTCCTCAATAACATTTTGTGGCAGATTTTGAATGtatgttttagttttagtgtaATCTTAGAGCTTTTATTTTTGATGGGTAAGTGACGATGCATTTACTGTTGTTGTAGAAATTTAGGAATTTAACATTAGGGAAATATAAAATATCCAAATCATCAGTTTGacaaatttatttttgtaaagcaGATCCTACATACTTTCTTTAAATCTATGTATCTGCTTTTTCTAGAGAGTAGAGTATTTTAGGTAGATATGTGGCTGTGAAATTATGAAAGttgatataataaaatatttgattAGTTGGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51375 lncRNA upstream 31208 14305760 ~ 14308441 (+) True G38276
TU51373 lncRNA upstream 45492 14293933 ~ 14294157 (+) True G38274
TU51342 lncRNA upstream 144232 14193103 ~ 14195417 (+) True G38247
TU51286 lncRNA upstream 294090 14045357 ~ 14045559 (+) True G38206
TU51241 lncRNA upstream 336462 14002962 ~ 14003187 (+) True G38164
TU51433 lncRNA downstream 119369 14464974 ~ 14466684 (+) True G38317
TU51447 lncRNA downstream 147298 14492903 ~ 14494740 (+) True G38331
TU51611 lncRNA downstream 262234 14607839 ~ 14610422 (+) True G38441
TU51621 lncRNA downstream 297327 14642932 ~ 14690625 (+) False G38449
TU51620 lncRNA downstream 343395 14689000 ~ 14690625 (+) True G38449
XM_039798695.1 mRNA upstream 2422 14335160 ~ 14337227 (+) False LOC120557952
XM_039798694.1 mRNA upstream 2422 14335170 ~ 14337227 (+) False LOC120557952
XM_039798690.1 mRNA upstream 5954 14324934 ~ 14333695 (+) False stx16
XM_039798651.1 mRNA downstream 70831 14416436 ~ 14435022 (+) False ankrd52b
XM_039798650.1 mRNA downstream 71484 14417089 ~ 14435022 (+) True ankrd52b
XM_039798670.1 mRNA downstream 90036 14435641 ~ 14443805 (+) True npepl1
XM_039797073.1 mRNA downstream 106589 14452194 ~ 14455976 (+) True ctsz
XM_039797291.1 mRNA downstream 228528 14574133 ~ 14583735 (+) False si:ch1073-456m8.1
TU51384 other upstream 1889 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 106124 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 811330 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 971360 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1053338 13286239 ~ 13286311 (+) True trnar-acg_15
TU51738 other downstream 462747 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 519454 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1299906 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1619809 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1704300 16049905 ~ 16050430 (+) False eefsec

Expression Profile