RNA id: XM_039798674.1


Basic Information

Item Value
RNA id XM_039798674.1
length 3578
RNA type mRNA
GC content 0.47
exon number 8
gene id nab2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14266964 ~ 14277430 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGACAGCCAGAGTGTTAGCATGAAGAAGTAGCCAGCCAACAAGAGGACAGACAGACCCACAGGGGCTAAAATTAGCTTGCCTCTGGCTGGCTAACCTGACAACATTTCGACTAAATAAGGTCTCCACGGAAGATTAAACGACAGCACAGCAGCAACCCGTTATTAACGTATTTAGCTAGCAAACAGCCAACCGAGCAACTAACGATAATAACGGTTAGCTAATAACAGCAGCGAGCTGGACTAGCTAATACGGACGCCTGTTTCCCTTCCTGTGGGCTTTGACGAGAAAGCTAAGGCATGTTTTGGACACCGGACGAGCCCATTTCACTCCGGGAGTAGCCTACCGACCTGTGACATCGGTGGTTTGGAGACACACCTTACCGTTTTTCCCGTCTCTGCACATCCGTCTACCTGACCAGAAGAAGAGCTGTGTGCCATGTCTCTGCCACGCACACTTGGGGAGTTGCAGCTCTATCGGGTGCTGCAGAGGGCCAACCTGCTGGCCTATTATGAAACCTTCATCCAGCAGGGTGGTGACGATGtgcagcagctctgtgaagCAGCAGAGGAGGAGTTTCTGGAGATCATGGCACTAGTTGGCATGGCCACCAAGCCACTGCATGTGCGTAGGCTCCAGAAAGCCCTCCGAGACTGGGCAGCGAACCCTGCCCTTTTTAGCCAGCCCGTCTCTAACGTTCCTCTTGGGGGCATCCCACTGTTCAAAGTGGAGGGGACTGGCACTGGTGGATCAGCCGGCGGGCCCAGGAAGTCTTTGAGCAACGGGCAGCCGGAGTCACCGTGTGAAAGGGAAGATCGGGCGTGTCTTACTCCAATGCACAGTGGGAGTCCAAGAAGCCCTTGCTCCCAGGCCTCCCCACAGCCACCAGACACACACTACAGGGAAAAACTGTCCCCCATGGACCCACACTGGCTCAGCCCAGAGCCTGATGGGACATCTGGAGTAGACGAGGAGCCCCCCAGCCCACCTCTGCTGTCAACATGTCCTCCAGGTCCCTCCACATCTCCTAGCCCCTCTGTTTCTCTTGCCTCGTCGGCCCTGTCAGCCTGGCCCGGAGGACAGCTGGATGGGGAGACGGCAAGGGCTGTGGTGGAGAGCGTGGAGAGGCTCCTCAGGACCTTGCCCAGGTCCGATCCTGCAGAGTGGAAGACTCTGCTTAGGATGAACAAGAAGATGGCAAAGACTGTGGGACACATCTTCAAAATGGGGTCCCAAGATGTAAGCAAAGAAGAAGAGATCCGAAAGTACAGTCTCATCTATGGACGCTTTGACTccaagaggagagaggggaagcAACTCACACATCATGAGTTGATCATCAATGAAGCTGCAGCCCAGTTCTGTATGCGCGACAATGCCCTTTTGCTGAGACGGGTGGAGCTCTTTTCTTTGGCTCGGCAGGTGGCGAGAAAATGTGCCTACACCTCCACACTAAAGCATGCAAGGACAAATACCGACGAGAATAGTGTACTGTGCCAGAAGAGAGCGAGACATGAGGTCATCATGCCTGAGAGTGTGCCATCATTTCTCGGAGTGGAAGGCTCAGAGGGTTTGACGCAGAGGGCAGATGATGACAGCTTATCTGCAGAAAGCCTCGACAGTGTATCGCATGACATCGGCTCACAGTGCAACCAATCTCCATCCCCCCGTCCCCACACTGACACATCCAACCCTGCCAACTGGAGTCGCCATCTCATACAGCAAACGCTAATGGATGAAGGGTTGCGATTGGCTCGGATGGTATCACATGATCGGGCTGGCAAGATCAGCCTAGGGTCAGAACAAAATCACTCTACAGACCATGACAGTAAAGTTGAGAGGCGGAGCTCGATAACAGTGTGCAGGAGCAGCAGCCCTTGCATCACCAAAGACGACTCTAATCATCGTGGGAAATGAAAATGCTCAGCTTTTGTCAGGGAACTTGTCCTCAGGCCTGCCACTAAACTCCGCTCAGAGTCTGCAACACAGGCTGCTATTGACACTGACTGATCTGATGAGGAGAAGACTCTTATCGACTTCAAAATCAATACAGTAATTATCTGAATTTACCAGCGACTGACATCATAAACCTGCAGTGACATCTGAACAATGACATTGTggatcaaaaatgttttgaattcaaTGCAGATTTTAGCTGATAGTGGAAAATGTACTGATTTTATCAGGACAAACCTGATATTTTGTTAAGTCAGATTATTGTGAGAAGTGCCGTGTGTTGAGAGTGCCACCTGTTTTAGAAGAAATGGGCTCGACACAGCAGGGGGCACTGCAACTTTGGAAATTGTCTCTCTCATCTTACTCCAGTATCATACTGTAGTTCTGTAAAGGAAATTTGGTTTCAATAGGAAGACTTTTATCTACATTTTCAGAAAGTTACAATCTAAAAACAGTATGATGACATTCTCAGCAGCTCCTCACCCTCAGGAAAAAAATTGATGTTTTGAAGTCAGTGTATTCTTTAGGATTCAAAGATGAAGATAAATAAAGTCCACATAGATGGATtagtaaaaactaaaaaaaggaggaaagtgTGGCACGTTAATCTAGATTTCCCAGAGCGTACAGACAAAACGCCGTCAGGCTCAGAGGCCTTTTGTCCTTTGCTGCATCGTCTGCAGGCATGCTTACTGTAAGTTTATGAGATATAGAGCCGCAGGTCTTCATCATCCCCTCCTTCACATCTTTCTGTAATATTTTGCACAAGTGGCTGATGTggtgttttgtaaaaaaatgaTACATCAGGCTTTTCATTATCTTTAATTATGTGCAAAATGTACTGAGAACACCTTTTCTAAACATGATGTTAAGAACACTGATGCTTTTACGATTTCCAGTCCACAGTTAACTTTTCAGTTGCCACTCTCTACACATCAGGTTTTCAGGGTCAGCTATAGGGTCTTGCTCCAGGGCTCTTCAGCAGGGAGGATGCTTGCTGTCATCAGCTGCTCTTCCCTCTCATCGCGagactgcattcaaaatatatatgCGAGATTTagataatttaaaaaacatttatcaCAGAACTTTTAGAAAATGATAAGTGGTGGGGATAAGCGTAGATTTTTTAATGCGATTTTATTTAGGTGTAGCGAAAAGATATGGCAGCGTGTTTTTGGGATGATTTCTGTAGTCTTAATTAGGTGAACTTTATTTCAGTTTCCCTCTTCTGTCTTTTGAGACTTATAGTTAATTAGGGTGACTAATCTTTCTGTACCTTCTAGgctttagaaaaagaaaaaaaaacacatgcagagGTTTACAGAAAGAAGTCTCATGGTGCTTGACTCTTGATACAGCAGCTCCTACAAGTTCTGTAAGTCTATCTgtttaaaattgttaaaatgttttcagacttCATGTAATGACAAGGCTCGTGttgaaaatgcatttttgtatACTTAACCACAGAGTATGTCAGTGAGGTAGCTTGCTGTGCATCAGTTACACCTGCCTGTCTCTTGAGCATTAGTAACCTCAGTTTATTATGTTGcaaaacagattatttattttgttacatctcaataaatgttattttattgcCTAAAGCCAGTGTGCTGC

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51342 lncRNA upstream 71547 14193103 ~ 14195417 (+) True G38247
TU51286 lncRNA upstream 221405 14045357 ~ 14045559 (+) True G38206
TU51241 lncRNA upstream 263777 14002962 ~ 14003187 (+) True G38164
TU51240 lncRNA upstream 274785 13991909 ~ 13992179 (+) True G38163
TU51232 lncRNA upstream 277123 13911329 ~ 13989841 (+) True G38156
TU51373 lncRNA downstream 16504 14293933 ~ 14294157 (+) True G38274
TU51375 lncRNA downstream 28331 14305760 ~ 14308441 (+) True G38276
TU51433 lncRNA downstream 187545 14464974 ~ 14466684 (+) True G38317
TU51447 lncRNA downstream 215474 14492903 ~ 14494740 (+) True G38331
TU51611 lncRNA downstream 330410 14607839 ~ 14610422 (+) True G38441
XM_039798687.1 mRNA upstream 8679 14253007 ~ 14258285 (+) True inpp1
XM_039798680.1 mRNA upstream 18517 14242426 ~ 14248447 (+) True LOC120557947
XM_039798681.1 mRNA upstream 18517 14242426 ~ 14248447 (+) False LOC120557947
XM_039798679.1 mRNA upstream 18517 14243433 ~ 14248447 (+) False LOC120557947
XM_039798702.1 mRNA upstream 33427 14227097 ~ 14233537 (+) True LOC120557956
XM_039798689.1 mRNA downstream 47505 14324934 ~ 14333695 (+) True stx16
XM_039798690.1 mRNA downstream 47505 14324934 ~ 14333695 (+) False stx16
XM_039798691.1 mRNA downstream 47505 14324934 ~ 14333695 (+) False stx16
XM_039798692.1 mRNA downstream 47505 14324934 ~ 14333695 (+) False stx16
XM_039798695.1 mRNA downstream 57731 14335160 ~ 14337227 (+) False LOC120557952
TU51331 other upstream 33439 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 738645 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 898675 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 980653 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 1058706 13205484 ~ 13208258 (+) False spcs1
TU51384 other downstream 57960 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 530923 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 587630 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1368082 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1687985 15965414 ~ 15966107 (+) False ccdc174

Expression Profile