RNA id: XM_039798679.1


Basic Information

Item Value
RNA id XM_039798679.1
length 1719
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC120557947
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14242426 ~ 14248447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTTTAATTAGAGttatgtaaagcttttgatgggacagttaggtcctagagatgtggtgacaacagctgcgCAGAGGGGGCCCAATTTGATTTTTTGTCATGGGGCCCAAAATTCCTGGCGGCGCCCCTGAGCCCAGTACACTAGATGGCAATTGCAACAACGCTGTTTTATTGAACCATGGTGGAGTTCGGTGGAAGAACAGCTTTAGACAATCCCCCGTATTAACAGCCGCTCCTGTTCGTGCCCTCATAGATGAACAAATCAGCATTAAAGGATCTTTCCTGCCCCCAGAGTGTCCTGTCACAGTGTGTGCACAAATGCACAGTGATGATGGTGATCTATGGGAGGCATTTGCCCATTATAACACAAATGCAGATGGCACTGTCAACTTGACCAAGGATCATTCAGTCGGGGGTTCATATTTGGGCTGTGAGCCGATGGGACTCTTCTGGGGACTGCAGCCGGCTCCTTGTGCAAGAGAAGGTTTGAGGCTGAGGAAAAAAAACGTAGAGACTCCATATGTAATGCTCTTGTCCTTACTCGAGGGCCATGTTTCACCGAGTGAGAGGCAAAGCACTGAGCTGGCTGCAGTTATTACTGAGCGCTGGTACATGGCACCCGGCGTACGGAGAACAGAGATTCGTCAGGATGGAGTTGTGGGGACTTTGTTTTTACCGCCAGGACCAGGCCCATTTCCAGCCATGTTGGACCTGTGGGGAATGGGTGGAGGACTGGTAGAGTACCGCTCCGCCCTTTTAGCATCCAGGGGCTATGCTAGCTTGTCCCTTGCCTACATAGGGCACAAAGATTTGCCTGGCTCACTAACCCATATCAATGTTGGGGATTCATATTTCGAATCAGCATTCCACCTACTCCAAGATCATCGTCAGGTGTGTGCCGACAGAGTTGGGATCATAGGTCTCTCCTTTGGAGTCTACCTGACTCTTCGAATTGCCACTAAGACTGTTGTCAAACCAGCCTGTTTGATTTGTGTCAATGGCCCAGTAGGAAGTACCGTGAAGTTCTCCGATCCAGATGGCAGGACTGAACAATTTGAAAGTGACCAGAAGTATTGGACATATAATGATCAAGGCCACGTCAGTTTCAAAGACGTCTCCTTGCCTGCAAACCTTTCGGCTGAGAGCAAAGTGAAGATAGAGCACCTCACCTGTCCATTAATGTACATAGTGGGTGAAGATGACCTGAGCGCTTCAAGTATAGAGAGTGCCAACCTGATTGAGGAGACCCTGAAGGCTGCAGGTAAATCCCAGTTGTTCACCTGTTTGTCGTACCCCGGTGCCGGTCACCTGATTGAACCGCCTTACACACCAAATTCAAGAGCTTCCCTGTGGAGCGTCAAACCACAAAAACTGGTCACCCTGTGGGGAGGTCACCCCGCACCCCACGCTGCTGCCCAGGAAGATGCCTGGAAGAAGATCCTGGATTTCATGGAACGTAATCTGAGACGTGAactgttgattaaaaaaaatgcaggtCTGAAGGTGCCGCTCTGCAGTTGTACGATTTAGAGAGgcaagtccctccccttccggtggaccaccATGGGACCTATTTCAGAAACAAGTGTGTACGGTAGTGAATGGGGAGAGACAAAGCATTTTTGGATTCCATCTGAATTGAGCcggattacacatatgatgttcatcagtttaaaagataattttgcaagtcaaTAAAGTCTCCGTTTGTCAAAAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51342 lncRNA upstream 48016 14193103 ~ 14195417 (+) True G38247
TU51286 lncRNA upstream 197874 14045357 ~ 14045559 (+) True G38206
TU51241 lncRNA upstream 240246 14002962 ~ 14003187 (+) True G38164
TU51240 lncRNA upstream 251254 13991909 ~ 13992179 (+) True G38163
TU51232 lncRNA upstream 253592 13911329 ~ 13989841 (+) True G38156
TU51373 lncRNA downstream 45486 14293933 ~ 14294157 (+) True G38274
TU51375 lncRNA downstream 57313 14305760 ~ 14308441 (+) True G38276
TU51433 lncRNA downstream 216527 14464974 ~ 14466684 (+) True G38317
TU51447 lncRNA downstream 244456 14492903 ~ 14494740 (+) True G38331
TU51611 lncRNA downstream 359392 14607839 ~ 14610422 (+) True G38441
XM_039798702.1 mRNA upstream 9896 14227097 ~ 14233537 (+) True LOC120557956
XM_039798693.1 mRNA upstream 17349 14221022 ~ 14226084 (+) True LOC120557951
XM_039798677.1 mRNA upstream 33742 14206169 ~ 14209691 (+) False rh50
XM_039798676.1 mRNA upstream 33742 14206237 ~ 14209691 (+) True rh50
XM_039798652.1 mRNA upstream 79022 14154131 ~ 14164411 (+) True lrrn2
XM_039798687.1 mRNA downstream 4560 14253007 ~ 14258285 (+) True inpp1
XM_039798674.1 mRNA downstream 18517 14266964 ~ 14277429 (+) False nab2
XM_039798675.1 mRNA downstream 20428 14268875 ~ 14277430 (+) False nab2
XM_039798672.1 mRNA downstream 20430 14268877 ~ 14277429 (+) True nab2
XM_039798671.1 mRNA downstream 20431 14268878 ~ 14277429 (+) False nab2
TU51331 other upstream 9908 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 715114 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 875144 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 957122 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 1035175 13205484 ~ 13208258 (+) False spcs1
TU51384 other downstream 86942 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 559905 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 616612 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1397064 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1716967 15965414 ~ 15966107 (+) False ccdc174

Expression Profile