RNA id: TCONS_00073922


Basic Information

Item Value
RNA id TCONS_00073922
length 2232
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_037649
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9286419 ~ 9289070 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCCCACATGACGCAGCACGCATCCAGAGCAACGACACCGTTGCTCATACCTGTACTGGACCAGTTTTGGAGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATGTAAGTAACTATTTACATTGCATAAAGTTTGGTTTTAGCCGAATGAGCACGCatttattgcactgtaaaatgaAAACAAGTCACCCTTCATGACAGTTTTGCAAGCGCCATGCGGCCTTACCGAAAGTATGGAAGTTAGCATTAATCTCAAAACAACTATCGCAAACGTATTATCGAAATATGTTAGATTCATTGCCAGATTATGTTTATACTTTGTTTTGTgtacttttacaaaaaaaaacactgttattttgtTTGTCTAGTAACGTTAGCTTCAGTGAATGTGAATTATTCTGTCTCAAATCATTCGTCTTAAATGTTCTGCCTCTTTCCGAATTAGCTAGCAGAACACCACTAGCATGGGGTATCTTCCTCGTACATGTGTCAGTTAAAAGTTAACGGCTAAGTTTGTAGTCACAAATGTGTTTCCTGCTTGATTAAAAAAGATGAGGACATTATATTTTTAGCACCTCTCTCTGCAATGTATCATAAAAATCGTAAACACTTTatcttttgatatatttatttgaaatattttagttTGCCCTAAaccatttgtttaatttaaaagatTAGATTTGCATTGCAATATCATCAATGATCTTGATATTTACCTAAACTCTTCTTTAAATTTGTGTTTCTTCATTAGAGAGATGTCAGAAGCATAAATGACATGATGGCCAGGAGATATAGCTGGGGAAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGGTCATGATTTATCACTATCACATATATTAAATGATTTATCACTGACATGCTGCTCACTCTGTTTTTGTTTAAAGGCAAATAATGGTGAACAAAGATGTTTATGTGATGCTAGACACACTTTTTGCTGAACACATACTGAAAATTTTACCTCACATTTTATGGAGGATTTCATTGCATAAGAATAAAAGGTTGCCAATTCTTTACACATTTGGTTCCAAATAACAAACAATTCATGTATTACAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCAGTTTTTATGTCCCAGCTGGACAAATACACTCAAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTCAACGCATCAATTGGAGTTATTGGAACTGAAACAGGTAAGGCAAACATGGTAACAATGTGGCTGATACATGTTTATGCAATAAGTACTTTATTTACTCATCTTGCCTAATAGGTGAATCGTGCAAAACAAAGTCATTCATTTTAaggataaatataaaaaaaagcatgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtatgtatgtatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagttgaACTCTGTTGAATAGGTTGTACAGAACCGCACTGATAATGACATTTTACGTTTGTAGTTATATTGCCTGCAATATTCCATTTTTTCATTATTCACTTACCAACTATAGGATCCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAGAGCTGATCTCTGACTACTATATGTAGTGGACATCATCATTGAGGGCATCCCTGTGCTGTCTTGGAAACCAGGCCAGGGCTCTGAACCTCCAGTATCCACCACAACTCAGCAAAACATTTAAGGTGTTTCAAAGACTTTTTGTGGGACTTGACACTGCGACTTGACACTGCGTCCAAAGTCTTCCTCCCGATTCATGACACAAAAACTTCTGAGTTAGTAAATTAGTTGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTTACTTGGAACAATGTGGTAGTTACGCACAGACTTCTTCAGTTCCTGGATAAGTCTGCAGCAAATATGggcattttgatttgcttttgtatatatgggcaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttattttattttaatgttgtagTACATATGAAAATGTACTGTACTGTGCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075297 lncRNA downstream 235904 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00073916 lncRNA downstream 262150 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073926 lncRNA upstream 66302 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00074962 lncRNA upstream 1079310 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073971 lncRNA upstream 2266006 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 2268136 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 2282242 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00073921 mRNA downstream 3900 9251466 ~ 9282519 (-) True XLOC_037648
TCONS_00073920 mRNA downstream 43642 9230446 ~ 9242777 (-) True XLOC_037647
TCONS_00073919 mRNA downstream 57478 9183837 ~ 9228941 (-) True XLOC_037646
TCONS_00073917 mRNA downstream 60439 9180620 ~ 9225980 (-) False XLOC_037646
TCONS_00073925 mRNA upstream 33354 9322424 ~ 9348058 (-) True XLOC_037650
TCONS_00073927 mRNA upstream 121939 9411009 ~ 9415000 (-) True XLOC_037652
TCONS_00073928 mRNA upstream 126590 9415660 ~ 9419704 (-) True XLOC_037653
TCONS_00073929 mRNA upstream 288673 9577743 ~ 9671244 (-) True XLOC_037654
TCONS_00073930 mRNA upstream 386856 9675926 ~ 9705512 (-) False XLOC_037655
TCONS_00073901 other downstream 1631118 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 1747396 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 2568618 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 2877148 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 4839315 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073935 other upstream 454489 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 481265 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 1556848 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 2259702 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 2262534 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

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