RNA id: XM_039798739.1


Basic Information

Item Value
RNA id XM_039798739.1
length 8387
RNA type mRNA
GC content 0.51
exon number 60
gene id LOC120557980
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15214633 ~ 15298484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTGATAAGATGTCCAGCTTCCTACACATCGGGGACATCTGCTCCCTGTATGCAGAGGGATCCACCAATGGTTTCATCAGCACCCTGGGATTGGTGGACGACCGCTGTGTCGTCCAGCCTGATGCGGGGGACCTCAACAACCCTCCGAAGAAGTTCCGAGACTGTCTGTTCAGACTGTGTCCCATGAACCGCTACTCAGCCCAGAAGCAGTTCTGGAAAGCGGCGAAGCCTGGAGGGAACACAGACACGGTGCTCCTCAACAAGCTTCATCATGCAGCTGACTTggagaaaaagcaaaatgaCTCTGAAAACAGAAAGCTGCTGGGAACAGTCATTCAGTATGGGAATGTCATTCAGCTCCTCCACCTGAAGAGCAACAAATATCTGACAGTGAACAAGCGTCTGCCAGCGCTGTTAGAGAAGAACGCCATGAGAGTGATGTTGGACACCGCTGGGAACGAGGGCTCCTGGTTCTACATCCAGCCCTTTTACAAATTACGCTCCATTGGGGACAGTGTGGTGATCGGGGACAAAGTGGTGCTGAACCCAGTGAATGCTGGTCAGCCGCTCCATGCCAGCACACATCAGCTTGTGGATAATCCAGGATGCAATGAGGTGAACTCGGTCAACTGTAACACCAGCTGGAAGATCGTCTTGTTCATGAAATGGGGCGACAATCAGGAGATCATCTTAAAAGGGGGCGACGTGGTACGGTTATTTCATGCCGAGCAGGAGAAATTCCTCACCTGTGAtgatcacagaaaaaaacaatatgtttTTCTCCGCACTACTGGGCGGCAGTCAGCTACCTCGGCAACCAGCAGCAAAGCCCTATGGGAGATAGAGGTTGTGCAGCATGATCCATGTCGAGGGGGGGCAGGCTACTGGAACAGCCTGTTCAGGTTCAAACACCTGGCCACTGGACACTACCTGGCTGCAGAGGTGAATCCAGAATATGAAGAGGAGTGCCTGGAGTCCCGCTCCTCACTGGACTCTGAGCAAGAGGCCCTACGGGCCCGTTTGAGAAATGTCCAGGACAAAGTCATGTACACCCTTGTGTCCGTACCTGATGGAAATGACATCTCTTCCATATTTGAGCTGGACCCTACCACATTAAGAGGGGGAGACTCACTGGTACCCAGaaACTCCTATGTGCGCCTCAGGCACCTGTGCACAAACACATGGGTTCACAGCACCAACCAACCAATTGACAAGGAGGAGGAAAAGCCTGTCATGCTGCGTATCGGCACCTCGTCCCTGAAAGAGGACAAAGAGGCTTTTGCAATTGTGCCCGTCTCCCCGGCTGAAGTGAGAGACCTTGACTTTGCCAACGATGCCAGTAAAGTGCTGGCCTCTATTGCTGGAAAGCTGGAAAAAGGAACCATCACACAGAATGAGAGGAGAGCGGTAACCAAGCTTCTGGAGGATCTGGTGTTCTTTGTGGTGGATATTCCCAATAACGGACAGGATGTTCTAGAGATCATGGTCAACAAACCCAACAGGGAACGACAGAAACTCATGAGAGAACAGAATATTCTCAAACAGATCTTCAAGCTGCTGCAGGCTCCATTCACAGACAGTGGGGACGGTCCCATGTTGCGACTGGAGGAGCTGGCTGACCAGCGGCATGCCCCCTTCAGACACATCTGCCGCCTATGTTACCGGGTTTTGCGTCACTCTCAGCAGGACTACCGCAAGAACCAGGAGTATATCGCCAAACAGTTTCGCTTCATGCAGAAACAGATTGGCTATGATGTTCTAGCTGAGGACACAATCACAGCTCTGCTCCATAACAACCGCAAGCTGCTGGAAAAACACATCACTGCTGCAGAGATTGACACGTTTGTTAGCCTGGTCCGCAAGAACCGTGAGCCCAGGTTCCTGGACTACCTATCAGACTTGTGTGTGTCAATGAATAAGTCCATCCCTGTGACACAGGAGCTCATCTGTAACGCAGTGCTGGATCCAGCTAACGCAGACATCCTCATAGAAACTAAACTTGTGCTGTCGAGATTTGAGATCGAGGGAGCGTCGCTCGGGGAGAACTCTGTGGAGtcagaggaggatgaggaggaggtgtggtTGTTCTGGAAAGACAGCAATAAAGAGATCCGCAGTAAAAGCATCAGGGAGCTTGCCCAGGATGCCAAGGAGGCCCAGAAGGAGGACCAGGAGGTGATCAGTTATTACAGATACCAGCTGAACCTGTTTGCCAGGATGTGTTTGGACCGCCAGTACCTGGCAATCAATAAGATCTCTGGCCAGCTGGATGTGGACCTGATCTTGCGATGCATGTCAGATGAAGACCTGCCCTATGATCTGCGGGCCTCCTTCTGCCGCATGATGCTGCACATGCATGTGGATCGTGATCCTCAGGAGCAGGTTACACCTGTGAAATACGCTCGACTCTGGTCTGAGATCCCCTCTGAGATCGCAATTGACGATTATGACAATGATGGAACATCTAAAGATGAAATTAAGGAGCGATTCTGTCTGACTATGGAGTTTGTTGAGAACTACCTGAGAGACGTGGTGTGTCAGAGCTTCCCTTTTGCAGATAAAGAGAAGAACAAGCTCACCTTTGAGGTGGTGAATCTGGCCAGGAACCTGATATATTTTGGCTTCTACAACTTCAGTGACCTGCTGAGACTAACCAAGATCCTGCTGGCTATTTTAGACTGTGTCCATGTGAACACAGTTTTTCCTTTCAACAAGCTGGACAAAGAAGATGAGAGTAAAGGAAGTAATGTGATGAGGTCCATTCATGGCGTAGGAGAGCTGATGTCTCAAGTGGTCCTGAGAGGAGGGGGCTTCCTCCCCACGGCTTCAAACACCAGATCCAATGGAGACACAGTCAAGACCCAGACTGAACCTGAGAAACAGGACATACTGGTCATGGACACCAAGCTCAAGATCATTGAGATCCTGCAGTTCATCTTGAATGTCCGCCTGGACTACAGGATCTCCTGTCTGCTGTCTATATTTAAGAGGGAGTTTGATGAGAGTAACTCCCAGAGTGAATTATCTGTAACTGGAGCAGTGGAAGGACCGAACAACATGCCAGgGGCTTTGGACTTTGAGCACATAGAAGAGCAGGCAGAGGGGATATTTGGTGGAAGTGAAGAGAACACCCCATTGGACCTGGACGATCATGGTGGCCGTACCTTCTTGAGGGTCCTTCTCCACTTAACCATGCATGAATATCCTCCTCTGGTGTCCAGAGCCCTCCACTTGCTCTTTAGGCACTTCAGCCAAAGGCAGGACGTCTTGCAGGCTTTTAAGCAGGTCCAGCTGCTGGTCACCAGCCAAGATGTGGAAAATTATAAGCAAATAAAGTCAGACCTGGACCAGCTGCGCTCTATCGTAGAGAAGTCTGAGCTCTGGGTGTACAAGAGGCAGGGGCCAGACGAGGGCATGGATGCAGGAGAGGGGCTCTCCACTGAGCCAGAACATAAAAAGGGTGATTCAGGGGGTGCAGACAAACCAAAGAAAGCTGAAAGCACCAGCAGTTACAACTACAGGGTGGTAAAGGAGATCCTGCTGCGGCTCAGCAGGCTGTGTGTCCAAGAAGGTCTGTCAGGTAGGAAGAGCAAGAAACAGCAACAGAGGCTGCTGAGGAACATGGGGGCTCATGCTGTCGTCCTTGAGCTCCTCCAGATCCCTTACGAGAAGGGAGAAGATTTGCGAATGCAGGATATCATGAAGCTAGCTCACCAGTTTCTACAGAATTTCTGTGCAGGAAACCAGCAGAACCAAGCCCTGCTGCACAAGCACATCAATCTTTTCCTCAACCCAGGGATTTTAGAAGCTATTACCATGCAGCACATCTTCATGAACAACTTCCAGCTGTGCAGTGAGATCAATGAGCGTGTTGTTCAGCACTTTGTCCACTGCATCGAAACACACGGCCGCAACGTCCAGTACCTCAAGTTCCTTCAGACTATCGTCAAAGCAGAGAATAAATTCATCAAAAAGTGTCAGGACATCGTCATGGCAGAGCTGGTGAATGCTGGCGAAGATGTTCTGGTCTTCTATAATGACCGCGCCTCCTTCCAGACACTGGTCCAGATGATGCGATCAGAGCGAGACCGCATGGATGAGAACAGTCCTCTGATGTACCACATACACTTGGTGGAGCTCTTGGCTGTCTGCACTGAGGGCAAGAATGTCTACACAGAGATCAAGTGTAACTCCCTGTTACCACTGGATGACATAGTGCGGGTGGTGATCCATGAGGACTGCATCCCTGAGGTGAAGATCGCCTATATCAACTTCCTGAACCACTGCTATGTGGACACTGAGGTGGAAATGAAGGAGATCTACACCTCTAACCACATGTGGAAACTCTTTGAGAACTTCCTGGTTGACATTTGTAGAGTGTGCAACAATACAAGCGACCGTAAGCATGCAGACATCATTCTAGAGCGGTATGTGACGGAGACGGTCATGAGCATCGTAACGACTTTCTTCAGCTCGCCTTTCTCTGACCAGACCACCAGCCTGCAGGCTTCTCTGTTGGGGAAAATATTGAAGACCAGGCAGCCAGTCTTTGTGCAGCTGTTGCAGGCAGTATTCAGGGTCTACCATTGTAACTGGTTGGTCCCAGTCCAGAAGGGCTCCGTTGAGAACTGTATCAAGGTGCTTTCTGACGTCGCCAAAGGCAGAGCAATAGCCATCCCTGTGGACCTGGACAACCAGGTGAACAACCTGTTTGTGAAATCCAACAACATTGTCCAGAAGACAGCCATGAGCTGGAGACTTTCTGCTCGCAACGCTGCACGCAGAGACTCTGTGGTGACCGCTTCACGGGACTACAGGAACATCATCGAGAGGCTGCAGGACATTGTGTCAGCTCTTGAGGACCGTCTGCGCCCGTTGGTCCAGGCTGAGTTGTCTGTTCTGGTGGACGTCCTGCATCGGCCCGAGCTGCTCTTCCCCGAAAACACAGACTCGCGCAAGAAGTGTGAGAGCGGAGGTTTTATATGCAAGCTGATCAAACATACCAAGCAGCTGCTAGAGGAAAATGAGGAAAGACTCTGCATCAAAGTTCTTCAAACTCTGCGAGAGATGATGACAAAAGACCGTGGTTATGGAGAGAAGcTCAGGGCCTTTGATGATGAGATGGATATGCCTAAGCAGCTGGATCAGAACCAGCCTGAGAAGCTGTTGGAGGACCAGAAGAGGGGCGAGGCACTGAGACAGATTCTGGTGAACCGTTACTATGGCAACTTCCATCGAAGTGGTGTGCGGAGGGACAGCCTGACGTCATTTACCAATGGCCCCCTCAGTCCGGTAGGATCCAGCAAAATCCAATCAGCATTAGGGGGTCCTGGGGGCCTGAGTCGTGGGGAAATGAGCCTGTCAGAGGTACAGTGTCACCTGGACAAAGAGGGAGCCTCTGACCTGGTCATTGACCTCATCATGAACACCACTAGTGACCGCGTCTTTCAAGAAAGCATCCTGCTGGCTATTGCTTTGCTGGAAGGTGGAAACACCACCATCCAGAGATCGTTTTTTTGCCGTCTGACAGAAGACAAGAAATACGAGAAGTTCTTCCGGGTCTTCTATGACCGTATGAAGCTGGCCCAGCTGGAAATCAAAGCCACGGTGACAGTTAATACCAGTGACCTGGGAAACAGGAAGAGAGATGATGACAGCCAGGACAAAGACGTCCCTGTTCGCAaaaaagCCAGAGACTCAGCGGTGATCATGACAGAGGATGTGAAAGAGCAGCTATTAGAGGCCTCGTCTGCCACTAAGAAGGCTTTTAACTCCTACCGGCGTGAAGCGGACCCTGAGGACCACTTCACCTCAGCCGATGGCCAGCCCAGCACTGGGGACAAGAACCAGGACGAGGGAGAAATGAGTTTTGTGATCGTCATCATGCAGCCTATCCTTCGCTTCCTCCAGCTGCTTTGCGAGAATCACAACCGTGACCTACAGAACTTCCTCCGCTGTCAAAACAATAAGAACAACTACAACCTTGTGTGTGAGACTCTGCAGTTCTTGGACTGTATCTGCGGAAGCACCACAGGGGGTCTCGGTCTACTGGGGTTGTACATCAATGAGAAGAACGTTGCCCTCATCAACCAAACTCTGGAGAGTCTCACAGAGTACTGCCAAGGCCCCTGTCATGAAAACCAGAATTGCATTGCCACACACGAGTCCAATGGAATTGATATCATAATCGCCCTGATCCTTAATGACATCAACCCACTTGGGAAAAAGCGGATGGACCTGGTGTTGGAGCTCAAGAACAATGCATCCAAGCTGTTGCTCGCCATCATGgagagccgccatgacagtgaGAACGCAGAGAGGATCCTGTACAATATGAGGCCCAAAGAGCTGgtggagGTGATAAAGAAGGCCTACCTGCAGGGAGAGGTAGAGTTTGAGGACacaagggaggaggaggacaacGGGGAAGAGGAGGAACACGATGCCGCTTCCCCCCGAAATGTTGGACACAACATCTACATTTTAGCTCACCAGCTGGCGCGTCATAATAAGGAGCTGTCCATGATGTTAAAGCCAGGAGGGGCCAATGGAGAGGGAGATGAGGCCTTGGAGTTCTACGCCAAACACACTGCTCAGATAGAGATTGTGCGCCAGGACCGCACCATGGAGGAGATAGTGTTCCCCGTGCCCAACATCTGTGAGTTCCTGACCTCCGAGTCAAAGCTGCGAGTCTACTACACCACAGAGAGAGACGAGCAGGGCAGCAAGATCAACGACTTCTTCCTGCGAGCAGAGGACCTCTTCAATGAGATGAACTGGCAGAAGAAACTCAGAGCCCAACCAGTGCTGTACTGGTGCTCCAGAAACATGTCCGTGTGGAGTAACGTTTCCTTCAACCTGGCTGTGCTCATGAACCTGCTAGTCTGCTTCTTTTACCCCCTGGAGGGGGTGCATGCAGGTATGCTGGATCCCCACCTGTCTGCGCTGCTGTGGATGGGAGTTTTGGCAACACTGGTCATCGTAATCATCATGCCCCAACCGCTGGGCATACGTGCCCTCGTCATTATCACCATCCTCCGTCTCATCTTCTCTGTTGGCCTGGAGCCCACCCTCTTTCTCCTGGGTGCTTTCAATGTGTGCAATAAAATCATCTTCCTGATAAGTTTTGTGGGAAACCGAGGAACTTTCACGCGAGGCTACAAAGCCATGGTGTTGGATTTTGAGTTCCTCTACCACCTCCTTTACCTCACCATTTGCTCCCTGGGGGTGTTTGTCCACGTCTTTTTCTACAGTCTGCTGCTGTTCGACCTGGTATACAGAGAAGAGACCTTGCTGAATGTAATCAAGAGTGTGACTCGTAATGGACGCTCCATCGTGCTCACTGCTGTCCTGGCTCTCATCTTGGTCTACCTGTTCTCCATCGTTGGCTACATTTTCTTCAAAGACGACTTCATCCTGGAGGTGGATCGTATCCCCAACACGACTCTAAAAAATGGAGCCAGTCTGGCCAGTGAGTTTCTGTCATCAGGAATGTGTCAGGGAGGGACTGATGAGAACTGCACCACAGAAGCCCGGCCGGAAGATTTGGGGAATGACAGTGAGGAGGACGGTGACATGGAGCGGACGTGCGACTCTCTACTTATGTGTATCGTCACCGTGCTGAGTCATGGCTTGAGGAGTGGAGGTGGTGTCGGGGATGTTCTCCGCAAGCCTTCCAAAGAGGAGCCACTGTTTGCAGCCAGAGTGATATACGACCTGCTGTTCTTCTTTATGGTCATCATCATTGTCCTCAACCTCATCTTTGGTGTTATCATCGACACCTTTGCTGACCTGAGgagtgaaaaacaaaagaaagaagaagtcCTGAAGACTACCTGCTTTATCTGCGGCCTGGAGCGGGACAAGTTTGACAACAAGACGGTGACTTTTGAGGGCCACATCAAAGAGGAGCACAACATGTGGCACTACCTATTCTTTATTGTGCTGGTAAAAGTTAAAGACTCCACTGAATACACAGGCCCTGAGAGCTACGTGGCTGAGATGATCAAGGAGCACAACCTGGACTGGTTCCCACGGATGCGCGCCATGTCACTGGTCAGCAGCGATGCAGAGGGGGAACAGAATGAAATCAGGAACCTGCAGGAGAAGCTGGAGTCGACCATGAGGCTGGTGGTCAACCTGTCTGGACAGCTGACTGAGCTCAAGGAGCAGATGACGGAGCAGAGGAAGCAGAAGCAACGAATTGGTCTTCTTGGTCATCCCCCTCACATGAACATTAATCCCCAGCAGCCTGCCTAAGGGCCCGTGGGGCCAGTTTCACCAGTGCCTAAGCACTCCTGTCAGTGCACAACATGTTAGACAGGAGAATGCCAAATCATGTCCGTCTCCAGTATGTATTTAAGTTGATGTCTGACTGTAATCAC

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0048016 inositol phosphate-mediated signaling biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005220 inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51769 lncRNA upstream 239477 14969673 ~ 14976904 (+) False G38538
TU51770 lncRNA upstream 244084 14915678 ~ 14972297 (+) True G38538
TU51749 lncRNA upstream 352274 14863322 ~ 14864107 (+) True G38526
TU51712 lncRNA upstream 359312 14806648 ~ 14857069 (+) False znf740a
TU51717 lncRNA upstream 360374 14765297 ~ 14856007 (+) False znf740a
TU52021 lncRNA downstream 98245 15396729 ~ 15397507 (+) True G38738
TU52045 lncRNA downstream 163817 15462301 ~ 15463452 (+) True G38762
TU52079 lncRNA downstream 243769 15542253 ~ 15543372 (+) True G38788
TU52129 lncRNA downstream 327827 15626311 ~ 15626840 (+) True G38829
TU52133 lncRNA downstream 345577 15644061 ~ 15644399 (+) True G38832
XM_039798746.1 mRNA upstream 8362 15197507 ~ 15208019 (+) True LOC120557981
XM_039796381.1 mRNA upstream 50654 15159592 ~ 15165727 (+) True si:dkey-28n18.9
XM_039796383.1 mRNA upstream 56983 15157708 ~ 15159398 (+) False LOC120556705
XM_039796382.1 mRNA upstream 56983 15157917 ~ 15159398 (+) True LOC120556705
XM_039796563.1 mRNA upstream 98223 15019473 ~ 15118158 (+) False LOC120556827
XM_039798751.1 mRNA downstream 4346 15302830 ~ 15306602 (+) True LOC120557984
XM_039798257.1 mRNA downstream 19765 15318249 ~ 15349263 (+) True slc4a8
XM_039798259.1 mRNA downstream 19765 15318249 ~ 15349263 (+) False slc4a8
XM_039798258.1 mRNA downstream 19765 15318249 ~ 15349263 (+) False slc4a8
XM_039796289.1 mRNA downstream 61179 15359663 ~ 15375612 (+) True si:dkey-195m11.8
XR_005638919.1 other upstream 341922 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 399945 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 878621 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 982856 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1688062 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 347027 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 666930 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 751421 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1134754 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 1219052 16517536 ~ 16543580 (+) True G39116

Expression Profile