RNA id: XM_039798751.1


Basic Information

Item Value
RNA id XM_039798751.1
length 2711
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120557984
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15302830 ~ 15306602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCGAGAATCGCATGGACTAActtgaaaacattttcacacgCAAAATAATCTTTACGTTAGCACGACAAGTAGTAAATATAATGAGAAATTAATACTAACCgttacagttgtttttttagttttttttatttaagcatTTTAGTGCATTTCACTAACTGCTGCTTTTGCCAACTTGTTCTTCATCACGAGTAAATAGATGCGTTTTTATTTGTGACTGCATTGGAAAAGTACCTCGGCTTTACTGCGTAATTGAagaaaaaaccaaaaacaacaatggagcGAATTCCAAGCGCGCAACCGCCTCCTCTGTCCAAACACCAGGCTGATCTGTCAGACGTGCAGGGGATGGATTTCCCGATGTATGTTTATAAACCCAGACGAGGactgaagagaggagaggagagcaagGACACCTACAAGCTGCCTCACAGACTTATTGAGAAGAAAAGGCGTGACCGGATAAACGAGTGCATCGCTCAGTTGAAAGATTTATTACCCGAGCACCTGAAACTCACTACTCTGGGCCATCTGGAGAAGGCTGTGGTTTTAGAGCTTACGCTCAAGCACGTGAAAGCCCTCACCTCTCTTCTGGAGCAACAGCAGCAGAAGATCCTCGCTCTGCAGAATGGCATGCAAATTGAGCAGTCTTCTGTCAACCAGGAGAAGTCAGAGGAGCTGTTCTGCTCTGGCTTCCACATGTGTGCCAATGAGATGCTTCGGTATCTGGGCAATCATGAGACTGATGGAGACTTCACACCATCCCATGTGATCAATCACCTTCACAAGTTAGCTGCAGAGGTGCTGCAAAGTCCGGTCCGACCCCACACTCCTCTCAGCCCTCAACCTGAGGAAATCCCTGCCTACCACCAGCACCAACCTCACAAGGAGATGCCCGCCAGCTTACCCCCGAAACCCAGGGAGGGCTATGGGAGGAACTGTGTGCCTGTCATCCAGCGGGCGTACGCTCCACTAAGCAGTGAGCAGAGTGGCAGTGATACGGATACAGACAGCGGCTATGGGGGAGAGCTGGAGAAGACCGAATCTGGGGCGCCACAGGGGTGTCCAGATTACTACGGTCAGGAGAGCCATCTGAAGCGAGCGCTGGGCGAGAAGCAGAGCTCCAGCATCAAGCAGGAGGATGACGAGCCATGCTACAAACGACCCCGGGGAGAGTCGTCTGAGGATGAGCTGCTCTCAGGTGGAGAATCATCAACATCATCGTCCTCTAGCGGTTATGGCAATTACATGAGCATATCCCCCAACCATCCAACTCCTCCACATCCCCTCTGCATGCCTTTCTACCTAATTCCACCTTCTGCTGCAGCCTACCTGCCAATGCTTGAGAAATGCTGGTACCCTGGGTCCGTGCCCATGATTTACTCTGGCTTGGGAGTCTCTGCAACCACCATGTCCAGCGAAAGACCATCTCCACCTCAGCTAGTGTTGTCTCCCAGGGGAGGCTCACCAGCCCCAGCCATATCTCAGACCCCCATGGACTCCCCTGCCCTCCTTCAGGCACTAAAGCAGGTACCACCCCTCAACCTGGAAACCAAAGACTGAAAGATAAGAGAACAGGGGTGAAGAGATTATCCTGTTCTAGTACCCAGGAGTAGAGACAGTAGTAGGAATGAGAACGTGACTGAGCCTTTCCATAATCCATCCTCATTCCTGTCCTCTGTTCCTCAGCCAGGAGGTCAAACCGAAAACTAGAGGACTTGTAGAAATAATcaagaggagatggaggagaggcAACATCTGTCCACACTCGGAGGATGCAAAGCTCTGGTTGAATGTTAAATGCTGGTATTACAAATGTATCATATAAACTGGACCTgctcgcacgcacacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacttggttgAATGTAAAGAAAGATACTTTTTAGACGCTGCTGTTAAAGTATAAACGCTGATTACACTGATGCATCTCACTTGTAGCTTTCGCAATAGAGACATGCCATCTTTGTATTTTAGAAAGTGTTGCACCAAATGTTAGCGGTAATATTCCCAAAGTTTGTTGCCTATGTCCCTTAGGTCACGATGACTGGCTCCATAAGATACAAGGGTTTCCTTAAGTGTGTACAGACAAGGGTACACCCAATGCACAGATGATGGAATGGGCCACCACATGaacacactgaatgagaagTCTTGTTTTTCATTGACAAACATACAGTTAAGATGGCTTTTCTGTAATTATTGTTCATAGACTTCTTGTACATTTCTATTTTTGATACCTGTTCTCGCACTCTGCCTCTCCGGAAGGATAGAAGGTGGGCAGAGTGTGGACAATTGTACGTTGTGTACTCAGAAACTGTGTACATACTGTAGCACTGTGCTGGACCTGCATACTCAACATCTGTTTCTGCTCAAGTCAAACCTGGTGTTTGTTCTTGCTGTTGCCTTTTACTTTGTGAAAAGCTGATAAATTTCAGATGTTTATTCTCTGTACTATGTATGAATACTGGAGTCAAAggagtgaggaggagagaagctGAATGTAAAAGTTTTACCCGAAGACTAGTTTTCTATAGAAAGAGGTACTTGAGATTTTATATTTTAGGACCTACATGAAAGATGTTTGATGTACATATTTTGTCTATAAATGTTGGTATACATTATATAAGTGTATTAAAGTATTTTTCTTTCCCGTGGAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03729 BHLHB2, DEC1; class B basic helix-loop-helix protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51940 lncRNA upstream 51897 15250569 ~ 15250933 (+) True G38670
TU51769 lncRNA upstream 325926 14969673 ~ 14976904 (+) False G38538
TU51770 lncRNA upstream 330533 14915678 ~ 14972297 (+) True G38538
TU51749 lncRNA upstream 438723 14863322 ~ 14864107 (+) True G38526
TU51712 lncRNA upstream 445761 14806648 ~ 14857069 (+) False znf740a
TU52021 lncRNA downstream 90127 15396729 ~ 15397507 (+) True G38738
TU52045 lncRNA downstream 155699 15462301 ~ 15463452 (+) True G38762
TU52079 lncRNA downstream 235651 15542253 ~ 15543372 (+) True G38788
TU52129 lncRNA downstream 319709 15626311 ~ 15626840 (+) True G38829
TU52133 lncRNA downstream 337459 15644061 ~ 15644399 (+) True G38832
XM_039798741.1 mRNA upstream 4346 15214668 ~ 15298484 (+) True LOC120557980
XM_039798743.1 mRNA upstream 4346 15214670 ~ 15298484 (+) False LOC120557980
XM_039798739.1 mRNA upstream 4346 15216381 ~ 15298484 (+) False LOC120557980
XM_039798742.1 mRNA upstream 4346 15216381 ~ 15298484 (+) False LOC120557980
XM_039798740.1 mRNA upstream 4471 15214633 ~ 15298359 (+) False LOC120557980
XM_039798257.1 mRNA downstream 11647 15318249 ~ 15349263 (+) True slc4a8
XM_039798259.1 mRNA downstream 11647 15318249 ~ 15349263 (+) False slc4a8
XM_039798258.1 mRNA downstream 11647 15318249 ~ 15349263 (+) False slc4a8
XM_039796289.1 mRNA downstream 53061 15359663 ~ 15375612 (+) True si:dkey-195m11.8
XM_039796279.1 mRNA downstream 146591 15453193 ~ 15455490 (+) True LOC120556644
XR_005638919.1 other upstream 428371 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 486394 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 965070 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1069305 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1774511 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 338909 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 658812 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 743303 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1126636 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 1210934 16517536 ~ 16543580 (+) True G39116

Expression Profile