RNA id: XM_039798755.1


Basic Information

Item Value
RNA id XM_039798755.1
length 2606
RNA type mRNA
GC content 0.47
exon number 6
gene id tatdn2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15948449 ~ 15960280 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGACAGCAGCAGAAAGAAGTTGACATTTAAGTGGCGACGAACTACAATCACCTCACCCACACATCCTCAGCAGAGAGATGCTGGCTTAGGCACGCCCTCTCGCTGGAATATGTCGCCGAATGAAGAGTCAAATACTTTGCCCCTCAGAGACTCTCCAGGACCTGATGGCCTTGGAGCACTGAGTCTGGACACTCCCAAGAGAAAAGCAGGGGTGCTCGGTGAAAGCACACCCTCTTTTGGCAAGCTTAAGCTGAGGAAGCTTTCCAGGATAAATTTGGAAAAATTCACCACTTCAGAGGAGAAACCTATGGACAACTTATCCTGGCAGCTGGAATCCACAGAGAGCCAGCAAGTATCACCTCCACCTCACTCTTTCGTcttgaaaaagaaagagaggacacCCGAAGAGGGATCGAAGGCTATCTACAGGAGGGCATTGATCGCAGCCATTGGCAACCCAAGCACCGGAGGCAGCTCTACAAAGATCCCCAGGACTTGCACTAACAGCCTGTCTTTGCCGTTTGTGTCTTCACCAGTGAAGACTGAAGCGGCCAGTCCAGCATCACTTGATGGAACGGTCATAGATATAAAGTGTTCCTCAATCAAACCTGAAAATGAATTTGAAGACAACGGCACTGTCCAGGAAGAACAGTGGTCCCCTCTTCAGGTGTTTGAGGACATTGGAGCCCAAGGTGACAGCTCAGAGCTAAAAACAGACGGAAGAagtGTTGTGCTAAAAGGAGAAGATTCACCCGAGATATTAGTTGCTCAGGACTCTGTGCTTGTAGAAACAACCTCTCAAGACaagttatttgctacagaaacTGGACCAGAAGCCGAGGAATGTGACTCGTCCCTCCCTGCCCTGGAGTATATCCCAGATTCTTTGACTTGTTGCTCTTTTGACAGCCAACAGTGGGAAAGTCCTTCTGTGACAACCCAGGGAGATGCTACTTCCTCTCTAACTTTTTCATCCACTAATGAAACCACTGAGGCTGTCCAGGCAGCTGATGAGGACATTGAGATGCCTTTCTCACTGTCACACAGGAAAGTTTTTGTCTCCGTCAAGCAGCCCCACCCAACAAACATGGCCCCTCCAAAGACATTCAGAGTTGAGACAGAGAGTTTCCGCTCCTCCAGCATTATGGCCTATTTATCGGATCCCTTTGCTCTGCCACTACACTCAAATAGAGGAGCATTGAACCCTCACTTGAAGTCTACAACAACACGCAGGCAGTCCGATGCTGGCTCTTCCATGCTTCACCCTCCCTACTCCTTTACACATGGTGGCACCCCTAAAAGAAGATTTTCCTTGGGGGCAGAACCTATGCGGAACAGTTACCCCAACCTGAACAATCAGGTTGGTTTCATAGACACACACTGTCATATAGACATGCTCTATGGGAAGCTTGGCTTCTGCGGGACATTCAACAGCTTTCAAAGGCAGTACCAAAGCAGCTTTCCTCCACAGTTCAGAGGCTGTATTGCCAACTTCTGCAACCCAAGGCTCATGGTGAAGGAGGCCCTGTGGGAAGGTTTGCTGGCTGAAGACATGGTATGGGGGGCGTTTGGGTGCCACCCCCACTTTGCCAAAGACTACTCAAGTGTCCAGGAACGCAACATACTGATGGCCATGCGGCATCCAAAAGCTGTGGCATTTGGTGAGATAGGCCTGGACTACTCCCATAAAAACTCCACTGACTCCACCAGGCAAAAAGAGGTGTTTGCGCGTCAGCTGCGTTTGGCTGTGGCCATGCAGAAGCCTCTGGTGATCCACTGTCGGGACGCAGATGATGACCTGCTGGCAATCATGAAGAAATGGGTCCCGAGGGAATACAGAATTCACAGGCACTGTTTCACAAACAGTTATCCAGTGATTGAGCCCTTCCTGACAGAGTTCCCCAATCTCTATGTGGGTTTCACAGCCCTGATTACCTACTACAAGGCCACCGAGGCCCGAGATGCTGTCCGCCAGATCCCTCTGAACCGCATTGTGTTGGAGACAGATGCACCATATTTCCTGCCAAGACAGGTGAGGAAAGATGTCTGCAAGTTTTCACATCCTGGAATGGGCATCCATACGCTGCAGGAGCTGAGCCTGCTGAAGGGGGAAGACATGGCTACGGTCCTCGCCACCATCCGAAACAACACCGTTCAACTTTATGGCGTATGATCTTCAGAGATGGTGGATAAAAAATCCAAGCAAGAAGGAGAAGTCAGAATCAACGTTTTTGGATATGGTTTGTGACACAAACATTTTATGTGgctttttgttttagatttatCAAGCCTTCATGTAGAGATGGAGGAATATGGAGGAGCAGTCTCATTTGAAACTAAGTCTTGAAACGagtaaaaagcaaaacaataacaatgactggaaggatactgtatattattgtttatattagATTATATTTTATTCCATTGTTCAACACAGAAATTAATTCCTAAGCTTTTTGGTGTCTAGTTTTTGCTGTGTTTACATAATGTGACATCCCTTGTTTGTTCTAATTAATTTGGATGTTTGTCTTGTCTGGCCGCTGTGTAGTTCAGTTTGAAGCAATGGACACATATTAAAAGCCTTTGATCCTGCTTTTTCAA

Function

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process

KEGG:

id description
K03424 tatD; TatD DNase family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52303 lncRNA upstream 15476 15936341 ~ 15937084 (+) False crbn
TU52300 lncRNA upstream 30938 15919430 ~ 15921622 (+) False LOC120557201
XR_005638940.1 lncRNA upstream 30944 15919385 ~ 15921616 (+) True LOC120557201
TU52290 lncRNA upstream 37659 15914539 ~ 15914901 (+) True G38948
TU52211 lncRNA upstream 190245 15760792 ~ 15762315 (+) True G38885
TU52310 lncRNA downstream 24344 15984624 ~ 15985096 (+) True G38966
TU52394 lncRNA downstream 196433 16156713 ~ 16158362 (+) True LOC120557902
TU52395 lncRNA downstream 196433 16156713 ~ 16158362 (+) False LOC120557902
TU52396 lncRNA downstream 196433 16156713 ~ 16158362 (+) False LOC120557902
TU52400 lncRNA downstream 196433 16156713 ~ 16158362 (+) False LOC120557902
XM_039798752.1 mRNA upstream 7008 15942764 ~ 15945552 (+) True vhl
XM_039796379.1 mRNA upstream 15463 15923321 ~ 15937097 (+) True crbn
XM_039797315.1 mRNA upstream 38941 15903500 ~ 15913619 (+) True pa2g4a
XM_039798378.1 mRNA upstream 52659 15879790 ~ 15899901 (+) True erbb3a
XM_039798849.1 mRNA upstream 75700 15872990 ~ 15876860 (+) True arf3b
XM_039796380.1 mRNA downstream 5122 15965402 ~ 15974237 (+) True ccdc174
XM_039798969.1 mRNA downstream 31454 15991734 ~ 16011506 (+) True LOC120558102
XM_039798971.1 mRNA downstream 31454 15991734 ~ 16011506 (+) False LOC120558102
XM_039798970.1 mRNA downstream 31454 15991734 ~ 16011506 (+) False LOC120558102
XM_039798644.1 mRNA downstream 56699 16016979 ~ 16034090 (+) False prkcda
TU52135 other upstream 304709 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1078101 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1136124 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1614800 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1719035 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 5134 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 89625 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 472958 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 557256 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1151833 17112113 ~ 17119890 (+) True G39351

Expression Profile