RNA id: XM_039798758.1


Basic Information

Item Value
RNA id XM_039798758.1
length 7048
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120557990
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16917821 ~ 16962625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTCCTGCAGGATTCCGTTCACAGTCACAGGCGCCGGCCAGCACTCACGCTGTGAGCAGGTAGAGGTGACCAAGAGTATTCTCCAGCGTCTACTTGTTGCTTGGCCCAGGAGGGGTGGACAGAGCGGACTGGACAGGACAGGGTGATGTCTGTGTAAAACAGTAACATGTCGCCACATAGCTCATGATGCCTCCATCACCTCCCAGCAGAGCACCGGAGATCTGCACGGACATAAGTTTTTACGCGTATTCTCTTGAAATGTTGCTTATCTCCGTCCTTAAGGTGAATCGGGAGAAACGGAAACCCACAAGAAGAAGCGAGGAGGGACCCTGATGCGGTCATCAACAGGACTATGTCTTCTTAATCTGACGGACTGTATCTTCCAGTCTTTTCAAGTGACCGATTGACTTGAGTGAAGATGATCAAAGAGGGTTCTCGGTCGGCCACCTCGCTGCCACCGGATGCCATGGACATCATCCGCAGCAAGAACAACACCCGCCGTGTGAGAATCAATGTCGGGGGCCTTCTTCACGAAGTCTTGTGGAGGACGCTGGACAGGCTGCCCCGCACAAGACTGGGCAAACTGAGAGACTGCAACACCCACGACTCTATCATCGAGATATGCGACGACTACAGCTTGGACAGCAACGAGTACTTTTTCGACAGACACCCCGGCGCTTTCACCTCCATTCTGAACTTCTACCGCACCGGAAAGTTGCACATGATGGAGGAAATGTGCGCCCTGTCGTTCAGTCAAGAGCTGGACTTCTGGGGCATCGACGAGATCTACCTGGAGTCCTGCTGCCAGGCCAGGTACCACCAGAAAAAGGAACAGATGAATGAAGAGCTGAAAAGAGAGGCCGAGAACATGAGGGACAGGGGTGGAGAGGAGTTTACAACCACATGTTGTTCCgagaagagaaagaaactcTGGGACCTCTTGGAGAAGCCAAGCTCATCATTTGCTGCTAAGaTCCTGGCAATTATCTCCATCCTCTTCATTGTGTTGTCTACCATTGCCTTGTCTCTGAACACCCTTCCAGAGCTGCAGGACACAGATGAGTTTGGTCATTCCACAGACAACCCACAGCTGGCCCATGTGGAAGCTGTGTGTATTGCCTGGTTTACCATGGAGTACCTACTTCGCTTCCTCTCTTCCCCCAACAAGTGGAAGTTCTTTAAGGGTCCTCTGAATATCATCGACCTGCTGGCCATCCTGCCCTACTACGTCACCATCTTCCTGACAGAATCCAACAAGAGTGTGCTGCAATTTCAAAACGTGCGCCGCGTGGTTCAGATTTTCCGAATCATGCGGATCTTGCGTATTTTGAAGCTGGCTCGTCACTCCAcaggtcttcagtctctgggttTCACTCTTAGGAGGAGCTACAATGAGCTGGGCCTGCTTATCCTTTTCTTGGCCATGGGCATCATGATATTCTCCAGTCTGGTGTTCTTTGCTGAAAAGGATGAAGAGGACACCAAGTTCAAAAGCATCCCAGCTTCCTTCTGGTGGGCTACCATTACTATGACCACAGTAGGCTATGGAGATATTTACCCCAAAACTCTACTGGGAAAGATAGTTGGAGGTTTGTGCTGCATCGCCGGAGTACTGGTGATAGCCCTGCCTATCCCCATCATCGTGAATAACTTCTCTGAGTTCTACAAAGAGCAAAAGAGGCAGGAGAAAGCCATTAAAAGAAGGGAGGCTCTGGAGAGGGCTAAGAGAAATGGTAGCATTGTTTCTATGAACACAAAAGACGCCTTTGGCCGCAGTATAGAGCTCATGGATATAATGGTGGAAAATACTGAGCAAAAGATGGAGAAGGTGCATGATAATCATGTGTCTCCTAGTCGGCAAAAAGGGACACTCAAACTCAAGTCACATATGAGCCCCAGCAGCCCCACCAAAAACCTTGAATCCAACAACCAAGAGCAGGCCAAGCCCTCAAGCAGCCCTCAGCATCTCAGTGCACAGAAACTGGAGGAGATGTACAACAAGATGGCCAAGGCCCAGTCACAACCCGACATCAACAGCAAGGAAAAAGGGCCACCATCCAAAGCAGTTGGGCAGGGATCTGAATTAGAGATGGGAAGTATCCCCACTGAAGCCATCTCAAGCAAAGCAGAGGCAGTTGCAGACATAAGGAGCATGTCCAGCATTGACAGCTTCATCAGCTGCGCCACTGACTTACCTGAGAGCTCTCGCTTTTCCCACAGCCCCATCAGCAGCATGCTAGGGAGAGTCAGTACCAACCCCAGCCTGGAGCCCACCCTGGAGAATGAGCATGAAGGATCCCAGGACACCACTACACCCCTGATAGGACAAGGCACAAAGCCTGGCCTGCATTCTGACAGCCCCAGGAGTCTGCCCTTCAACAAACCGCACAAAAGCCGCTCACTAAAGGTCAACTTCAGAGCTGAGGAGGATTCAGGGACAGGGGCTCTCTCAGACAGCTCATCAGTCCGGAGCCCCGAGGTGTCCGTCTACACAACTGCCAGCAGCAGGACACCCAGCAAGAGCCCGGATAATTTAATGCCTAGCAGCCTCTTCACATTCCACGATGCGTCCATCAATACATTCATTGATGCTGATACAGATGAGGAGGAGCATCTGTATGATGGTTCAGGCACCAAACCATCCCAAAGACTTCTGGAAAGAACCAGGCCCAAGTTTGCCCCTCACTCCAGCTTCCAGCAAGGGGCCAACCACATGGAGGGCCTACAGAGGAAGCTGGGAAACAGCACACTGCCGCTAGAAGGGCAAGAGAACCATGTGGCTCAGGAACTACAGCCATTTCAGGGAGAGAAGAGTCACTCTAATGCTTAAAGTGGGAGTGACCACGGAGGAAACatacaggagaggaggaagcaGAAAGGAAAATGTAAGAAGCACAGTGAACTCAGCAAAACTGAACTTCccaaaaatatgaaagacaatgAAAACATTTGCAGGAACATTTgaagaattacaacacaaaatgCTTCTCCCATGAAAATAGATGCAGACAATGGGAAATAAGTTTGTGTTTTGCTCTCAAACCTTTTCCTACCAAGGACTCCTGAATTAATTAGTTTAGCAGAGGATTCTGATCTAAGAGGTTTTAAAAGTGTCTGATAGTTTTTACTATTTATACATGTGTTTTAGCCCAGATCATCATATAATAATCACCGCCTAGTTTTAAGAGTATAGGATATCATTTTTATAAGCAAAAACCTATTTTTCTGACATCCCCTGGGTACTACTTTAAAGCCACTATAGCAAACAATCCAATCAGTAGCAACCCACAGAGGGCATTGAAACATGGCACTGCAAAATGGGAAACTCATTCACTTGAGGTATTTCAAATAACTACGTTGTTGTGTGAAACGAGAACTTACATTTGTCTTCAAGTTATTGGTTACACAGTGTATAAATATGGCATTACAAAGGCAACAGTGTGTTGTGAAAATGTATAGTTTGCTTCCTTTAACTTCCTTCCTCAAAACTGGCCTTAGTTTATGTTGTCACccatgtttaatgtttgtatgagtgagaaagagagacatataCGGACAGACAGTACATACAAATAAacagtactgtatattcatTGTTATGTAGCGTTCTTGATCTCTTAAGTGTGAACTTGAGGAGCATCAAGTATTTCCATCTGAGTTTAGTGTCATGCACGTCCATATTTTTTTACtgcacagaaaatatttagacAACACAAAGACACTGTGAGGCTGCATCCATCGATTTCCTTCTTGTTCCAATGGTGCCCGACTGCTGGCAAGGGAGAGCACCTTAACGTgatcattattttcattataaacagaaaaaaaatactctttATTCTTGTTTGTAGTGGTGTTATCAGAATTTTAACCTGCCGTAAATCTAAATGTCTTTATGTGTTATTTCAAAACATTCTCAAAGGTGTCTCGAAGGAGTCATCATACCTATTGTAGCTGATAACTTCATATAAAATGACAGGTCTGATGAGCATCACTAGCTGGAAAGACAGCACTGAAAATCACTGAGATTTTTTATGTTGAACCTCCACTTTTGGAATGTGACTATTGTACATGTATAACTACAAAAGTAgaatattacacacacaaagaaacaacaTTAAATTTACAAGGTACAGAATgaaaataatttatatttttaagaaATTTTCTAAAAGAATTGACTCTTAGACAAATATATTGTGCTAATTTCGTAGTTTTGCATTTCGATATATGTACTGCATTATTTTGATGGAGTTGCATTTGTTAGACAATATACTGTAGTAGatgaatttgtattgtttgctACTGTCTCCCCGTAAATGTCTGTCCCTCTATCCTTATTTGCAATGTGAAGAACCAAAGAATTGTTCCTTCTGATATCTTGTACAGATGATGGTAAGTTTTACTGTTTTATCTCAAAAATGTAAGAAATGTAAGCATTCCTTTTCTAAATCTGACATACTTCAGGGAGCCATACTTGCTCATGCGGTACAAACATGTAAGTAGACGAGAGGACTGCCCTTTGAAGAAGAAAGCTGTTGACAGGGAATGAAAAGAATAGACGGAAAATGAAGAGGGAACACGGCACTTTAGTTCACACCCATTTCAAAAGCTAAAATTGGATTATTTACACACTGTGGATCTTGGCAAGTGGTTCGCTTCCAGAGATCCAAAACATTACACTCACATGAGGTCATGTGACATCTCTTACAAACACAAAGCCACCTCGCAGCAGTTCAACCAAATATCCTGCATCCTGCACCTGACTCCAAACATATGCtctttgttacattacacatGCAAGCATGTTTTTAAAGCATTATtaactttacaaaaaaaacatgcaagcaAGCTTTAAAGCCTGTTTTAGGTAGTTTTTAGTTAGTAGTGAGTCTAGAAATAGAAGTATTTATGCTGTATGGTTGTTTGCAATCATTAGACATTATATGAGTAAGATATTTCCGTGCCTTTGCTTTTAACAGACGCCTACCCCGCACACTGAATCTGTCGCTGTCTACTGATGCCCGAATGACAATTAAACAAACAGTAcagcaaataaacacacagagaactGGGTCATCAAGCTGTCAGACTGCTGTATTAGATACCCACCCCCTCCCTCTAATGTATTTCCTGTACACTTAAATGCACCAAACATTTACATGATGAAGGCCCAATCCACAAAAACAAACGTGCAGACTCACTCAGTGAAGTGAACGACCACTGTTTCCATGGTGATGGTTGAGATGACTCAATGGCTCGCATTTGATAAAAGCATGTAGACTAATTTGTAGAGACACATTGCAAATATACACAGTTTACATTCTGTTCATGCATTCACTCAATCATTCATTCATCTCTTCTTCCCTGCTCACCTGTGGCTTCAGTCTGGTGAAGCCTCAATTATCGATAAAATGATGTAAACAGAAAGCTGGATTGTGGGCCTTTAAATCAGACTGCCACACCATCCCTTTACTTCACTTTTTCATAGAAACATTGACACATCTCAGCAAATTACAAAAGAACAGGTAGAGCATGACCACAGCTACGTAAGGTGCTGTTGCTATGGTGTATGCTTACTTCAGCTACCGACCCCCACGGTGGGAGTGAGTGTGAAATGTGAATGGAATAGGAACAAGaggtgtgtgacagagagagctgtgcagccTGATTACAACTGACATCACTAATGATGGCTGTAGCACTCTGCTCCTTCACCTCATGCCCAACTTCACATCATCATTCAAGACATAATCTGTGAGCTTTCTCAGCTCTTTTATTGTCCTGTCTTTTAAAGACAGGACAATCACTATCATCCTCTCATTCAGAAAGTTATGCAGCTAGATTATGCACACTCATGCAGTCATGTGGGTTTTTCCATTACAAGCACCAGCCCCGTGCTTGCGTCTTTTGTGCAGAATGACAGTGCAGAAATGGCATCCTTTTGAGGATGTGTTCATTTCTGTGATTCTATTATTATCATCCTGGGCATGCAAAGGGAGGGTCTGGGCCAGAAGGGAAGGCTCAGTTACAGCAATGTCTTTTGTCTGACGATGTCATAGAGGAACAAACTTTGTAACAGAGAACATACAGTAAATACTCACTGATCTTTGGTATTGAGCCTCTCATCATCGTGGACAACTCCTTCCTCTGTTGAATTAATGTTAACAATGTCCTTATTGCCCTGTCTTTattattttcctgttttctgaactGCACTTTATTGATTATTCTGTAttaaatcctcttctgctttctCGTAACCATGCAACTAAAAATGTCAACATACAAACGGTCAAATACAATTTCCAAAGCACAAAGTATAATGTCAATAAGTATCAGAATTTTCTTTAAGCACAATACGCCACACTAGAGGTTCAAGCCAAATGCAGACACATCATTTAATTTTCAGAATCTTCCCCCTTATTTAGGGAATGAATCGCCTCTGTTCAACTCACACAGGTCTGTATGCCGCCCTTACAGTGTGTGgggaaatgtttgttttgtaagaTTTCATACTTTGTACCAGTTGACTTTATAGAATATTATCTTTGTGGTTTCCTGTTGTTCAACGCATGTAGCTCAATTAAACTTTAACCCACATAACTTGTAAATATCATCTTATAAGCTATAGGAAAATGTCTATGATCAGCAATTTGGAAGCAATTGCCTCCTTTTACTgactaatgcttaataaaagACAATAATCCAGTGTTGGTGCTGCACTCTATTAACGGAATTGTGTTttcatgaaaaacagtgaattCACACAAGAGGAATGTAATGCATGGAGAGCGAACACTGAGATTGGGCAAGGGCTGAGCTTGTGGTTTGTGGAAGGAAACTGCATATCTTATACAACAGCACCCTCcagtgttacattacattacatgtcatttagctgacgcttttatccaaagcgacttacaattgctatatatgtcagaggtcgcatgccaactaggggttaagtgtcttgctcagggacacattggtctgtattcaatgaaaaatatactgtacatattaaaATACTCTACAAAATCA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04885 KCNB1, KV2.1; potassium voltage-gated channel Shab-related subfamily B member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52633 lncRNA upstream 94565 16818746 ~ 16823256 (+) True G39210
TU52619 lncRNA upstream 131770 16785831 ~ 16786051 (+) True G39197
TU52618 lncRNA upstream 132756 16784748 ~ 16785065 (+) True G39196
TU52617 lncRNA upstream 135203 16782411 ~ 16782618 (+) True G39195
TU52557 lncRNA upstream 338099 16579085 ~ 16579722 (+) True G39143
TU52709 lncRNA downstream 5231 16967856 ~ 17046696 (+) True LOC120556687
TU52742 lncRNA downstream 85310 17047935 ~ 17048365 (+) True G39302
TU52745 lncRNA downstream 87172 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA downstream 88034 17050659 ~ 17053951 (+) False G39304
TU52750 lncRNA downstream 118041 17080666 ~ 17082576 (+) True G39308
XM_039797184.1 mRNA upstream 1258 16907842 ~ 16916563 (+) True LOC120557149
XM_039797180.1 mRNA upstream 10997 16897070 ~ 16906824 (+) False thumpd3
XM_039797181.1 mRNA upstream 10997 16897112 ~ 16906824 (+) False thumpd3
XM_039797183.1 mRNA upstream 10997 16897180 ~ 16906824 (+) True thumpd3
XM_039798912.1 mRNA upstream 176309 16738036 ~ 16741512 (+) True cav3
XM_039796363.1 mRNA downstream 1992 16964617 ~ 16968104 (+) False LOC120556687
XM_039796365.1 mRNA downstream 38549 17001174 ~ 17004437 (+) True wdr77
XM_039798841.1 mRNA downstream 56325 17018950 ~ 17020740 (+) True LOC120558021
XM_039798839.1 mRNA downstream 65084 17027709 ~ 17032694 (+) True irf6
XM_039798840.1 mRNA downstream 65084 17027709 ~ 17032694 (+) False irf6
TU52524 other upstream 374241 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 482592 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 867391 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 951714 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1269970 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 149488 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 230596 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 230596 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 230596 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 230596 17193221 ~ 17198217 (+) False srsf3b

Expression Profile