RNA id: XM_039798804.1


Basic Information

Item Value
RNA id XM_039798804.1
length 3454
RNA type mRNA
GC content 0.44
exon number 10
gene id hgh1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 29639606 ~ 29657185 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGTATCCGCACTGTGAGTATACACATGTTGTCTAATGTATGTAGAGGAATATAAACGAGATAAAACTGCGATATGAAAACTGGACAGGTCATACAGCTAGCTCGTTAAAGATACTGTTAGAAGATGTTGAGTGattctgaggctgcagagcTGCTCTCCTTCCTAACCCCCGATACACGTCCTGATGTCAAAGGTCACACCACAGGCTACATCCTGGGGATGTCTGGACACAGggATGGCTGCCGCTTCCTCCGCTCTAAATCGGACTTACTTGTGGCCCTGTTTGCTCTGACGTCCGACCCCTCTATTGCTATCGTGAAGGACTGTTACCACATCTTCATCAACCTGTCAGCCGATGAGACTCTGCACCAGGTTTTGCTGGCCGAAGTCAAGGTTCTTCCGGTGTTGTTGAAAAGGGTTCTGGATCCAGAGTACCTGTTCTCTGATCAGATCTGCACCATCCTGTCCAACCTGACCCGCCATGTGAAGACCTGCAAGACCGTGTTCCAGGTCCtccaggaggaggaggttggTCTGGCTCAGCTGGTGGAGATCTTCTGCACTGAAGGTTACAACAAGAAGGCTAATTTCAACTACCTGAGTCCTCTGCTGTCCAACCTGACACAGCTGCCCGAGGCCAGAAACTACATTATGGACAAGGACAGgtGTGTAATCCAGAGGTTGCTTCCCTTCACTCAGTACCAGGCATCAGCGGTGAGGAGGGGTGGAGTCGTAGGGACCCTGCGCAACTGTTGCTTTGACCACGCCCATCATGAGTGGTTGCTAAGCGACGCTGTGGACATCCTGCCCTTCCTCCTGCTGCCGCTGGCCGGTCCAGAAGAGCTGACGGAGAAAGAAAATgaggGTCTCCCTGTGGACCTGCAGTACCTCCCCGAGGACAAGAAGAGGGAAGAAGACCCCGACATCAGAAAGATGCTGCTGGAAACCCTTTTACTGCTGACAGCCACCGGAGCCGGCCGGAACACACTGAAAGAGAAGAACGTTTATTACATCATGAGAGAGTTCCACCGCTGGGAGAAGGACGTCCACGTCACAGCAGCCTGTGAGAAACTGGTCGAGGTGCTGATAGGAGACGAGCCGGAGCAGGGGATGGAGAACCTGTTGGAGGTGGAGATTCCTGAGGACGTGGAGGTGAAACTGAAGGAGGCAGACATCAAAGAACAGCAGGAGCTGgagaaagagcaggagaggatgagacaggaggagaaggaggaggaggaggaggagaagaagaagagggatgCAGAGGGGGAAGACAAAGAACAGGAGAGTGGACTGATACGATAAAGCCTGTTTTTAGACCTGGCTTCATGGACTATCTGTTGGAGTAACCGCTTTTTGTCAGTCAGACAGTTAAACGTTCATTACGGCTTTATTCGGACATGACAGGACGTTTACAGAAAGAGCCACGATGCTCGGTGATATCGGTCAGCTGGTCCATCGCTGCTGGAGAACCGCGCTGAGTTGAAAAGTGAGTAACAACATAAAAGAAGAGgggtgttttcagttttttcacaGGCTGCACcagaaatggattttaaaacatattttgttgttgACTGACTAATTAACTAATGTTGTGAGCGTAAGGAATACTCTCCATTGATAcattttatcatcatcatcatcatcatcatcatcaaatgtTACTGAATGTAATTGCTATTTAAATTTTGTTTTCCTCCTCTGTCCCAAACAAATATTTTAGGAAAGGATCTGACATCAGAAGAAGTCTTAACAACTTAAAAGTGACTCATTAAACtgagtttattattttatttattattattattatttttttttttacagtggtcAGAAAAGGCGGAACCATTAACTTTAATGTAGAATTGACTTCTTCTGATATTAGACAATATGTAAAATTGCCAATAGGGATGCACGGATCCGATACTGATATCGTGCCGATACTGACTCAAATAGCCGGATTGGTGCCGGTGACAATGGGGCTGATCTATTAAATTCTAtgtttatattctatatatatatatattatatactggaATTTAAATTCCTGTTAAAGTTTTGATCAATCTGTTGCTGCATTTAAAAGGTTTACACAAAAATTGTAATTCCTGTTAATTTTGACGATTGTTCACCAAGTTGCTGGTGCACCGTGCACGATTTATtatttcaataataaataacaaatcagTACATTCATAGCTGTATTTGTTTCttagattttgttttacaaagcTAGGAAAGCAATGTTTGAGTCAAGCCTGATGTTACCATCAGCCATTGGTAGTTATCCCCCGATGGCCGCTGTCGTCCCGGCGGGGAGTGAAGCACAGAGACCGTAGTAGGCTCTGGGCTGCCTctgctgattgattgattgattcattcattcattcattcattcattgtatGTATCATAGGAACGGTTTGTATATCTGGTTCCCCTTTTTGAATGAACGCCGCCTGCTGGCATGGAGAGTTACTTCCTCTCACGCAGGCACGGAACGGATGTACTAGTTGGCCGTCGATTGTAGTCTTTGCGGTGTTAAGCGCAACTTTTTGGCCAAAACCCAGGCAACGCCACAGTGGGCCATCATCGCCACTAGGGCTTTGCGGTCTGCCTAGTGTGTAAGCACCTTTTACACAAACTGTAAAAGAATGATCCCAGTCACTTCCACACAGTGAGCTTATGAAATAAACCCATGCACGATAtcaggaaaatatctaattgcgattattttatAATACTTTTGGtatcattcattttcattgaaaaatattatagtgtgatttttttgtttttgtttttattttgcgaggatctgtaccaaacaaagatgttttctttagtctgtaggatacgattgGTATGCtaggacgtctctgcagcaccacaatacttacaTTCAGAATGGGTTGACACATCGTTTGCCTTTTACAAATATTGTGCCCCCAATTtgaatattgcactagtccaatAGCGGTTAATTTTGCAGCCCTAGTATAGAATCAGTAATCTGTATCGTCCGACACCCAAAGCTCGTGATGGGGTGCGTTCTGGCCTGCTGTAGGATATCTCACCATCTGGATGGGTTGTCAGACTGTTCACTCCTTAACACCCAGTTTCCCTTAAGTTCCACTTTAAGTAGGTTTAAGGTTGAAATGCAGTCTGACagtattatatactgtatattgtgtatCATGATGATGTTCCAACTCTTTACTGAAGCTGTTTGATGTTAACACTTGAGTGAAATATTCAAACCCAGGACACCTTTCCCTCAAATAGAAATATTCTACACGCCTGCTGCATCACATGCGTGGAAACTTTGAGATCTCCACaagaatttaaaataaagttctgtCAGTTTGAACTATGTTTGGCTGCACAGTGTGAGTTTCTAATGAACATTACATTAACATTGTAATAAAACGGCTGTTTCTGATGAACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639012.1 lncRNA upstream 173039 29464818 ~ 29466662 (+) True LOC120557726
TU57113 lncRNA upstream 347956 29256755 ~ 29291745 (+) False G42453
TU57111 lncRNA upstream 373926 29256755 ~ 29265775 (+) True G42453
TU57097 lncRNA upstream 411381 29225774 ~ 29228320 (+) True G42441
TU57077 lncRNA upstream 451987 29186974 ~ 29187714 (+) True G42426
TU57215 lncRNA downstream 4021 29661206 ~ 29661426 (+) True G42536
TU57353 lncRNA downstream 261578 29918763 ~ 29984988 (+) True G42655
TU57373 lncRNA downstream 334738 29991923 ~ 29994778 (+) True G42672
TU57376 lncRNA downstream 345488 30002673 ~ 30005924 (+) True G42674
TU57377 lncRNA downstream 351852 30009037 ~ 30010008 (+) True G42675
XM_039798903.1 mRNA upstream 3061 29630099 ~ 29636640 (+) True zgc:153675
XM_039798289.1 mRNA upstream 43835 29485167 ~ 29595866 (+) True LOC120557724
XM_039796567.1 mRNA upstream 431932 29200840 ~ 29207769 (+) True c4h6orf89
XM_039797819.1 mRNA upstream 653113 28965361 ~ 28986588 (+) False st3gal8
XM_039797731.1 mRNA downstream 13284 29670469 ~ 29717340 (+) False nisch
XM_039797729.1 mRNA downstream 13310 29670495 ~ 29717340 (+) True nisch
XM_039797728.1 mRNA downstream 16430 29673615 ~ 29717340 (+) False nisch
XM_039797369.1 mRNA downstream 68327 29725512 ~ 29837466 (+) True stab1
XM_039797286.1 mRNA downstream 315308 29972493 ~ 29975991 (+) True LOC120557186
TU57106 other upstream 397448 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 2941130 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 3090902 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 3090902 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 3366386 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 2802947 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 2813610 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 3380749 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 3530553 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 3605010 33262195 ~ 33336767 (+) True angpt4

Expression Profile