RNA id: XM_039798841.1


Basic Information

Item Value
RNA id XM_039798841.1
length 591
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC120558021
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17018950 ~ 17020740 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGGAACATACCTGGTTTGACTGTGGATGAACTACAAACTTGTGAGAGTCATCAGTGGTATAGAAAATTCATGACAGAGTGCCCGTCTGGACTTCTCACCTTTTACGAATTTAAGCAGTTCTTTGGCCTGAGGAATCTGTCGGACACTTCAAATGCCTACGTTATGACCATGTTTACAACGTTTGATATGAATAATGATGGCTTCATTGACTTCATAGAGTATGTAGCCGCTCTGAGCCTGGTGCTAAAGGGAGGAGTGAAGCAGAAGCTCCGCTGGTACTTTAAACTGTATGATATAGATGGGAGTGGCTGCATCGACCGTGAGGAGCTGCTTCAGATAATTAAGTCCATCCGTGCAATCAATGGAGTTCCTTTCGAGATATCAGCAGAGGACTTTGCCAACATGGTGTTTGACAAGATTGACATCAATGGAGATGgtgAACTTTCCTATGAAGAGTTCATGGATGGGATTCAGAATGACGAAATGCTGTTGATGACACTAACACAGAGTTTGGACATCACACACATTGTCGAAAAAATTCAAGGAGAGATAAGGGCCAACAACTAAAATCTCTCCAACTTTATGGAC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08328 GUCA1; guanylate cyclase activator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52633 lncRNA upstream 195694 16818746 ~ 16823256 (+) True G39210
TU52619 lncRNA upstream 232899 16785831 ~ 16786051 (+) True G39197
TU52618 lncRNA upstream 233885 16784748 ~ 16785065 (+) True G39196
TU52617 lncRNA upstream 236332 16782411 ~ 16782618 (+) True G39195
TU52557 lncRNA upstream 439228 16579085 ~ 16579722 (+) True G39143
TU52742 lncRNA downstream 27195 17047935 ~ 17048365 (+) True G39302
TU52745 lncRNA downstream 29057 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA downstream 29919 17050659 ~ 17053951 (+) False G39304
TU52750 lncRNA downstream 59926 17080666 ~ 17082576 (+) True G39308
TU52816 lncRNA downstream 137163 17157903 ~ 17159236 (+) True G39358
XM_039796365.1 mRNA upstream 14513 17001174 ~ 17004437 (+) True wdr77
XM_039796363.1 mRNA upstream 50846 16964617 ~ 16968104 (+) False LOC120556687
XM_039798758.1 mRNA upstream 56325 16917821 ~ 16962625 (+) True LOC120557990
XM_039797184.1 mRNA upstream 102387 16907842 ~ 16916563 (+) True LOC120557149
XM_039797181.1 mRNA upstream 112126 16897112 ~ 16906824 (+) False thumpd3
XM_039798839.1 mRNA downstream 6969 17027709 ~ 17032694 (+) True irf6
XM_039798840.1 mRNA downstream 6969 17027709 ~ 17032694 (+) False irf6
XM_039797450.1 mRNA downstream 13979 17034719 ~ 17042813 (+) True eps8l3a
XM_039797451.1 mRNA downstream 13980 17034720 ~ 17042813 (+) False eps8l3a
XM_039798921.1 mRNA downstream 76957 17097697 ~ 17102777 (+) True LOC120558072
TU52524 other upstream 475370 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 583721 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 968520 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 1052843 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1371099 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 91373 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 172481 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 172481 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 172481 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 172481 17193221 ~ 17198217 (+) False srsf3b

Expression Profile