RNA id: XM_039798848.1


Basic Information

Item Value
RNA id XM_039798848.1
length 2726
RNA type mRNA
GC content 0.42
exon number 5
gene id arf3b
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15871718 ~ 15876860 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctcgtttGCTGCTGAGTTCCTAGTTTCCCTGGTTGTCCCCCGGAAAATACCGTGAGACATTTAGTAACGTTAGAGGACTACTCGGCTAAGCCCTCCTTTATAATCTGTCACTGCTGGACAAGTGAAACTTTGCAGGAAGGCATCTGTAATCACAGCTGTAGCCACGCTCTGAAGTTTAAGGACTTCATCTGAATCATGGGGAACATTTTTGGGAATTTGCTGAAGAGCCTCATAGGGAAGAAGGAGATGAGGATCTTGATGGTGGGGCTTGATGCTGCAGGAAAAACGACAATCCTCTACAAGCTCAAACTGGGGGAAATAGTCACCACCATCCCAACCATTGGGTTTAACGTGGAGACGGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTGGGCGGACAGGACAAGATCCGCCCCCTTTGGAGACACTACTTTCAgaacacacaggGTCTAATCTTTGTGGTGGACAGTAACGACAGAGAGCGTGTGAACGAAGCACGAGAGGAGCTGATGAGGATGTTGGCTGAGGACGAACTGAGAGATGCAGTCCTCCTTGTGTTTGCCAACAAACAgGACTTACCGAATGCCATGAATGCTGCCGAGATCACAGACAAGTTGGGCTTACACTCCCTGCGCCATCGTAACTGGTACATCCAGGCCACCTGCGCCACCAGCGGCGACGGCCTCTATGAGGGTCTTGATTGGCTGGCCAATCAACTCAAGAACAAGAAATAAGAAGAAAACTGGAACAAGCAGCCACACCCCTCTAAGTTTTCGTTTGTTTTGGGAATGGGGAAGCGTAGGTACAGGGGTTTTGATTAATGGGTGAAAATCAAGATTCTGGCTTTGGGGAAGATTTTAGGCTTTCGTTTTCAGTCTCTTGAGGTTCCTAATAGTTTTCAGggcttattaaaaacacattctcaTGTACTTTATATTTAacctcacgcacacacacacacacacacacacacacacaaatgcacactaACCGTAAGCAATCACAGCAGACACTTGCTTCTCCTGTGTCCACCTCTTGTATTTAGGtgcaatgtactgtatgttcgtCTCTAGGTGCTGTAAGAAGTCATGTGTGACTCCACTGAGTCAGCAATGAGTCAAATATGACTTTTTGTTGGTGTATGTCTTTTAACTCATCTATGGACTTTCCGTCGTCCATAAAAAGAATGGTTGTGTGTCAGTtacacttgtttttatttttttttcctaacagGGCCATGTTTGGAAACAATCACAGCTGGCAGATTCATGTGACCATAATTCTACCTTCTAATTTGTGAGCAATGCTGAGACACTTTAATACTTAGATaaagtgtgtacgtgtgtgagCGTGTCCATATTCTGTATATGTTTCTGCAAGCGGCCCAGTCAGTATTAATCATGAAAAAGACAACAGGACTGGAGTTTTCCCTCTCACACGTCCTCTTACTGCCTCATTTTGGAAATCTTTTTGATATTTGTGGCATGTTTCTACTCCCCGTATGGCAACCCGAAGTCTTGAAGCAGCCCTTCACAACACGTTCTCGGCCGCCTGAGTTGCATGCGTCCCGGTAGATCTTGCTGACATTGTTGCATACTTTTCCATCCTCGGAGCTGCATGCATGTTGACGCTGTTTGTAGATTTTTTCTAACTGCAATCATCGTGTTATGATGCTGTTTACAGTAAAATGCAGAAACCACAAATTCCTGCATTTAGTTGTCAACATGCGCTTAATACAGTATAGTCAGCtttatggtcttttttttttttatgtgaaagcagtatacaaaacacaacacacatgacCTGCACAGCTGCTGCTCATCTGCCTTCATGTGTGTCCATATGAGTACTCAAACCACATCAGGCTTCTCtcgctttgtgtgtttttgtctcagACTTGCATATCGGGGGATGGTAACTGTGTTACTGAATGTGAATATTGTCGACGAATCTATAAATGgctgtaatatttatttaacatgCATATTCCTTTATTTCAGTGATAATTATGTAAAAGAAAGCAGGGTAAGCAGATCAATTCAGTCATCGGCACATCCACTACTCACTATTGAACAGCAGACGAGTTACTGCGTCACCACAGATACCAGCAGAATCCACAGACTTCTGTCAATAAAACAACTTCTTGTGTGCCATACATGGGTACTACTACTCATGTACCAGTGACCGTACAACATACTGTAAATCCACTTCACTAAGTTATGAGTGCATTGTTCATATTCAGCATCTATGTTAAATCATGACTTTGATCGTTTGGGTTTTGTGGCCTTAGGTATTTAGTGATGACTTCTAATTCATTTCCTCTCAGCTCGTTCAGTTCTGATTTCGAGCCACATATATTTATCTATAAAGAATAATTTACAGATTTGCTCTCTATGCCCTCAAAAGCACGGTGATTAGGCAAAGGTTTTGTCCTTTTGTTTTGCCAGTTTACTTGATTCATATTTGGCGGTAGATTTCCTGGGTTTTCCTTGGGTTGTAAAGAAACTTTGATGTAGACTTTGTCTGTGAAACAATGCTAATCTGTGCgaacaaaagaaaatgtgaaaaaaacattctgtaCCGTTATAGTTACACAAGTAGATTTTAAAACGGTGAAGACCATGTTTCAGTGCTGAATGCAAAGATACATCCTGTATGTGATGtaacaacaaacaaaatccTGCTCTATTACAAATAAACCCGTTTTATGTATGA

Function

GO:

id name namespace
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52211 lncRNA upstream 109403 15760792 ~ 15762315 (+) True G38885
TU52158 lncRNA upstream 116659 15673979 ~ 15755059 (+) True G38852
TU52174 lncRNA upstream 142318 15727979 ~ 15729400 (+) True G38860
TU52172 lncRNA upstream 149534 15718996 ~ 15722184 (+) True G38858
TU52133 lncRNA upstream 227319 15644061 ~ 15644399 (+) True G38832
TU52290 lncRNA downstream 37679 15914539 ~ 15914901 (+) True G38948
XR_005638940.1 lncRNA downstream 42525 15919385 ~ 15921616 (+) True LOC120557201
TU52300 lncRNA downstream 42570 15919430 ~ 15921622 (+) False LOC120557201
TU52303 lncRNA downstream 59481 15936341 ~ 15937084 (+) False crbn
TU52310 lncRNA downstream 107764 15984624 ~ 15985096 (+) True G38966
XM_039798051.1 mRNA upstream 11947 15851997 ~ 15859771 (+) False LOC120557571
XM_039798053.1 mRNA upstream 11947 15852208 ~ 15859771 (+) True LOC120557571
XM_039798052.1 mRNA upstream 11947 15852211 ~ 15859771 (+) False LOC120557571
XM_039798054.1 mRNA upstream 11947 15853447 ~ 15859771 (+) False LOC120557571
XM_039796824.1 mRNA upstream 37784 15824383 ~ 15833934 (+) True LOC120556934
XM_039798378.1 mRNA downstream 2930 15879790 ~ 15899901 (+) True erbb3a
XM_039797315.1 mRNA downstream 26640 15903500 ~ 15913619 (+) True pa2g4a
XM_039796379.1 mRNA downstream 46461 15923321 ~ 15937097 (+) True crbn
XM_039798752.1 mRNA downstream 65904 15942764 ~ 15945552 (+) True vhl
XM_039798754.1 mRNA downstream 71589 15948449 ~ 15959849 (+) False tatdn2
TU52135 other upstream 223867 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 997259 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1055282 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1533958 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1638193 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 88554 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 173045 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 556378 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 640676 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1235253 17112113 ~ 17119890 (+) True G39351

Expression Profile