RNA id: XM_039798864.1


Basic Information

Item Value
RNA id XM_039798864.1
length 3819
RNA type mRNA
GC content 0.45
exon number 12
gene id b4galnt1b
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15772189 ~ 15789905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGTCGGCTGATATGACCACGGAGATCTGAGTGTCGGCTGGCTTGACCGCAGTTGAATACAATAGATTTTCGTTTTGGAGAATATGTCTTTCTCATatGGGGAAGGTGCTAACTCATTTCTATCTACATTGTTTCTGGAGATGCAAGTGCTTACTGAGGATGTCCTTTTACTGACTGGATAGAGGCATTTAGGTTTCAGGATGCGCTCCCTGAGAAAGACGGTGTTGCTCGCCATCCTAGTGTCTGTGGTAGTGGTACTGGCCCTCCTCCATTCGTGGCCCACTCGGGCTTACACCACAGTGGATGTGTGGCAGCGACAGGGGCCAATAGTAGAGAGGCATCTGGAGGAGAGGCTCCCAGAACCAGACCACCGATTAGGCAACATCCCGTTTCACGTGAGGGACAATGTGGCAagCTTGTTGGCACGTAACGGATGCGTATGTGAGGGTGAGAGTGGAGGAGTAAACCTGCCCTTCGCCCAACTTCTGTTCCCGCGGGTGTCAGCTCACCCGCTGCACACCGCCTTTGAGGCCTCTGAGCTGGAGGAAATGAAGAGGAGACGGGCCAAAGAGTACAAGAGTTTCCAGGAGAGGTCACAGACACCTACAGATGTTCTCATTATTGCAGAGGCTAACAATCCCTTACAGTATCCAACACAGGGGGTTGAGGTACGACCCCTGAGAACAATCATCATCCCAGGCTTGGCCTTACACAGCCTTCCCAGAGAACACTACTCAATAAACATCACTGCCACGCTGGGAACGCTAAACGTGGCAGCAGAGGTGGACGGGATGAAAATCAAAGGTGATGGCGAGATGCACATGAGTCTGTCAAGCGGCCTCCTGCCCAACCTAAACCGACAGCTGCAGTTTGTcacctacacaaacacactgttcCACCCCAACACAGCAGACACAGTGCAGTTGGAGACAGAGGGGCATCAAGCCAGCTTCAGTATTAAGATTCGTCACGGTGTAACACCCAAACTGTATAACACAGGATCCAAAGGAGAGTACAACATCAGTGCCCTCGTAACCATAGCTACAAAGACTTTCCTGCGTTATGATAAGCTTCAAGATCTTATCAACAGCGTGAGAAGATACTATCCAACCGTCACTATAGTAATCGCTGATGACAGCGAAAACCCCCAAACCATTTCGGGGCCTTACATCGAACATTACATCATGCCTTTTGGAAAGGGTTGGTTTGCCGGACGAAACCTGGCAGTCTCTCAGGTGACCACAAAGTACGTGCTGTGGGTGGATGATGACTTCATCTTCACAGCCAACACCAAGCTGGAAAAACTGGTGGATGTTTTAGAGAGAACCACTCTGGATCTGgtgggTGGTGCAGTGCGGGAGGCCACaggttacactgccacctacagacAGACCATCTCCATTGAGTCAGGGGAGGAGGATGGTGACTGTTTACACATGAGGAGAGGATTTCATCACGTCATCCAAGGCTTCCCCAACTGTGTTGTGACTGATGGGGTCATCAACTTCTTCCTAGCTCGCACCGACAAAGTCCAGCAGGTCGGCTTTGACCCGCGCCTCGCAAGGGTAGCTCACCTGGAGTTTTTCATTGATGGCCTGGGTTCTCTCCACGTGGGCTCTTGTGATGACGTCATTGTCAACCATGCAACCAAAATAAAACTTCCCTgggtcagccaatcagagagtgACAAGACTTACGCCAAGTTTCGTTACCCGCCAGCCTCCTCCGACGCCACACACACGAAAAACGGCCTCCTGTTCTTCAAGAACCGATTTCAGTGTTTAACTCATAATTAGTTCCTCTTTACCCTGAGGGTTCCTCTGCTCCTCCTGAGTTGCCAAAGAAGTTCTCCTCTGCCCCGTTCCGTCAGATAAGATTTTAGACACACACTTTGGTTTGCCTTTTCTTGAAAATCTTCACAAGAGGTTTCAGGCTTCAACATAGAGATGTTACATTAGAGCAGTTTTTAGCATGTTTATTTGGTCAGTGCTAAAAAATAAAGTCCTGATACACTGTAAATATCCAGAAGCTGGATATGACCATCCATGCTCTCTAGAGAGTAGAGAATCAGCTGTAATAACAAACACAGACCTAGTTAAATGACTAATGCAAGGCTGTTTGTTTGTCAAATCTTATCTGGCTTTACATCCTTGAGTTGTTCTAACAGAGACTGAGCTTTGGGTAAACCAAACAGGTAGCATCTTTACAGTCTGACTCACTTCATTGTCATTCTAGGCTAACGTGAGCAGAGGTTCATGTGTCCACCTTCAATTTGCACTATCCAAAAACAAGACTGAGCTTGAAAAAGCAATAGTGACATCTAAGAGCCTGAGGACAAGGGGGAACTTTCCAGACAGTAACAATCCTGTAGACACAGCGCAGTATACTTTTCACAAATGCCACATGAAGAACGCATTCAGAACTTTTCCACCTGTGGTACCTGCGCTCTGTGACTGACTGGTCGTGCCAAAGGTTCGGCTGCTGGCTTTtgggcgtttttatcactttgtgTCTTTGGTTTTGCTACCCCTCTTTAGCCAGAATGTGCCATTTGTGAGCGATCAATTACATCTGAGCAGGACAAACTTGCGATCCCATCACATCTGGTGTAGCCTGATCTGGGAGCAgccttgtttttgtctttcactttcaACAAACATCTCAAGAAGAGCAGCTCTTCTGTCCAGTGCACACTGATGAATAACAGTGATTCATTACATGCTCcctaaaaacaaaagttgaatcaaCCAAAGTGCATGTTTATTTTCCCTCATTATAAGAGaagaaatgaggaaaaaaaacaggacattGAGACAGAATTAATGAAAGTTTGGTGATAAATTAACATCTTAAAAAAAGTGAGTAGTCAGAGCATGAGAGgaaaactgagagagacaaagtaAATGAGACATGGTGAGACGGTGACGTTTTTATACTGACTGTTTGGAGAGTTACTGTATGTCCGACTCATGCCTCAAGTGATGATGCTGTTGTTTTATACCATCGCCTTTAGATGGCACCCTTGTATCATACTATTGTTTCCTAATAGGGTTTTAAAGCTAAGTTAGGCTATTTTCTGGAAAAggccaaaaacaaacaaacaccatAATTGTAAAATACGGCCCTCCTCTTGCAGCTCTCTGCATCTGCATTtgtagaacagccaataggagcgccctctctctgaaatgacctgtcaTTGGCCAATGTCTTCTGTCACaggctagattttctaaagcctgcaaaaagagccaagaggaggtgcaAAAGTCTATTTACTGCTCAGTCTACTTGAATTACGATATGCTCAAAGGGTATTTTGGAAGTTTTGCCCAATGATGCCAATAAAACAGTTGGTATTATTAGCAAAGAGGGGGCAGAGATGTATTagctgatgattttttttaaatcttgagaagaatattttaaaacaattttatgTGATGTTTCTTTCCATTATGGAGTCTTCTTTTTGTTCACCTAAATGCAACATTCACTCTGTTCACCTCTGTAGACAGGGGTCAGAATGAAACTTCATCATTGACagtattttaaaaggcttttgtgtagttgtgtgttcaAAAATGTGTCTCATGTTAGGAATTGTAACCAACAACTGAGATCTTTAGCTGAGCTGAAAACCTTTATTTTAAAACCAGTGAtatttattgtgttatttattgtGTTAACAGAAATTTTACTTGCCTGCTTCACCCAAAAACCACTGGTGTCAGTTGAATGATCACAGCAGTATGAAACTTTTTCAATTTATTTCAGTTGTTGAcatattaaaatgtctgtggaACACCTGTCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52211 lncRNA upstream 15702 15760792 ~ 15762315 (+) True G38885
TU52158 lncRNA upstream 22958 15673979 ~ 15755059 (+) True G38852
TU52174 lncRNA upstream 48617 15727979 ~ 15729400 (+) True G38860
TU52172 lncRNA upstream 55833 15718996 ~ 15722184 (+) True G38858
TU52133 lncRNA upstream 133618 15644061 ~ 15644399 (+) True G38832
TU52290 lncRNA downstream 124634 15914539 ~ 15914901 (+) True G38948
XR_005638940.1 lncRNA downstream 129480 15919385 ~ 15921616 (+) True LOC120557201
TU52300 lncRNA downstream 129525 15919430 ~ 15921622 (+) False LOC120557201
TU52303 lncRNA downstream 146436 15936341 ~ 15937084 (+) False crbn
TU52310 lncRNA downstream 194719 15984624 ~ 15985096 (+) True G38966
XM_039798870.1 mRNA upstream 36348 15736545 ~ 15741669 (+) True tac3b
XM_039796501.1 mRNA upstream 62522 15713249 ~ 15715495 (+) True LOC120556777
XM_039796376.1 mRNA upstream 67127 15710216 ~ 15710890 (+) True LOC120556700
XM_039798516.1 mRNA upstream 68877 15676867 ~ 15709140 (+) True LOC120557865
XM_039796826.1 mRNA downstream 28718 15818623 ~ 15823565 (+) False ankrd33ab
XM_039796827.1 mRNA downstream 29522 15819427 ~ 15823565 (+) True ankrd33ab
XM_039796824.1 mRNA downstream 34478 15824383 ~ 15833934 (+) True LOC120556934
XM_039796825.1 mRNA downstream 34479 15824384 ~ 15833934 (+) False LOC120556934
XM_039798051.1 mRNA downstream 62092 15851997 ~ 15859771 (+) False LOC120557571
TU52135 other upstream 130166 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 903558 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 961581 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1440257 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1544492 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 175509 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 260000 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 643333 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 727631 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1322208 17112113 ~ 17119890 (+) True G39351

Expression Profile