RNA id: TCONS_00007185


Basic Information

Item Value
RNA id TCONS_00007185
length 1285
lncRNA type lincRNA
GC content 0.37
exon number 2
gene id XLOC_003712
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43295275 ~ 43297633 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAATATTAAGTTTAAACTTATATAGCTGAataaatttagttgaaacctgattattGTGTTAaagtaagttaaagtaacataaaaaacgTTTGTTTTTCACAGTGTATGTACAAAATAAGTATGGTCAGTACACATATGAAACtgcaagcttttattttgaatgcgtttaattgtgattaatcttttgacagcacttatatatatatatacgtaaagTAAGTTGGTTTGGATAAACATGGTTCCtaaattattaaaagttaaataaaataaaaatttaactcAATATGTCTACACTACTGGATAAAAGTCTTGTTGCTTATTCAAGTTTAAGGAACAGTAACTagtagcttgacttctagttgatcatttggtgtcagaagtggcttaaatgaaaggcaaaggcctctagatgacgcttatttgagcacaatgaaatctgatcatgtctgattttgaatgatttcatcaggacagtaaggtctgactctgctctgcTTCAGTCTCATCACTGatcagaaataatgtccagtatagaatataaagtcctgctgcagtggagacagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgacatgactcaaatcactgattaataaagtcatctggaatggtgaagaaagcgttcctgcaggactcccagagttcatcaagagtctttggattcatcttcaacacctcctccccatcttaccccagacatgctcaataatgttcatatctggtgactgggctggccaatcctggagcagcttgaccttctttgctttcaggagctttgatgtggaggctgaagtatgaggagcgctatcctgctggagaattgtccctctcctgtggtttgtaatgtaatgggcagcacagatgtcttgatatctcaggctgttgatgttgcagatctctcgcacgcccccatactgaatgcaaccccaaaccatgatttctcctttaccaaacttgactgatttctgtaagaatcttggctccatgcaggttccagtaggtcttctgcagtattgtgatgattgggatgcagatcaacagatgattcatcagagaaatccaccttctgacacttttccaaacgatcaactaaaagacaagttattatttgttgctcttacatctTCCAGTGCTCATTATAAGTTAGCGCACCccttttgaaaataaatagttttcacCATTCCTCagtaaacattttaatagtttattatattttattaaattgttatatc

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000173362

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007183 lncRNA upstream 217934 43070883 ~ 43077341 (+) True XLOC_003710
TCONS_00008691 lncRNA upstream 249636 43035558 ~ 43045639 (+) False XLOC_003708
TCONS_00008688 lncRNA upstream 411977 42839854 ~ 42883298 (+) False XLOC_003707
TCONS_00008692 lncRNA downstream 234949 43532582 ~ 43535890 (+) True XLOC_003717
TCONS_00007194 lncRNA downstream 345525 43643158 ~ 43646674 (+) False XLOC_003718
TCONS_00007193 lncRNA downstream 345525 43643158 ~ 43646674 (+) True XLOC_003718
TCONS_00008693 lncRNA downstream 513996 43811629 ~ 43817356 (+) False XLOC_003722
TCONS_00008694 lncRNA downstream 515760 43813393 ~ 43817356 (+) False XLOC_003722
TCONS_00007184 mRNA upstream 179026 43114108 ~ 43116249 (+) True XLOC_003711
TCONS_00007181 mRNA upstream 247254 43043171 ~ 43048021 (+) True XLOC_003708
TCONS_00007176 mRNA upstream 475545 42726712 ~ 42819730 (+) False XLOC_003705
TCONS_00007186 mRNA downstream 65442 43363075 ~ 43368382 (+) True XLOC_003713
TCONS_00007187 mRNA downstream 77693 43375326 ~ 43388063 (+) True XLOC_003714
TCONS_00007188 mRNA downstream 103568 43401201 ~ 43414172 (+) False XLOC_003715
TCONS_00007189 mRNA downstream 103959 43401592 ~ 43414158 (+) False XLOC_003715
TCONS_00007190 mRNA downstream 105892 43403525 ~ 43414172 (+) True XLOC_003715
TCONS_00007182 other upstream 250326 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007172 other upstream 669788 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 1830039 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 2137347 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007198 other downstream 727129 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 1027128 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 1027128 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 1031141 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007206 other downstream 1038033 44335666 ~ 44335780 (+) True XLOC_003733

Expression Profile

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