RNA id: XM_039798895.1


Basic Information

Item Value
RNA id XM_039798895.1
length 3234
RNA type mRNA
GC content 0.42
exon number 4
gene id hyal2b
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18196145 ~ 18201292 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTATTAATGATAATTGTGCTgcataaaaacaattttttttctcacagttGGACTGCATTTGTTACTATTCCGAGATAGCTCATATTCAAGCTAAAAATGTATAGAAGAATAACCTGAGAGCTTTTAAGTGACTTTTCTCAGAGCAGATGCAAGATATAAATCTGATTCAATTCCAAAGCACTGCCATTACCAGTGttgtcttgcattgccagacctatcaccacagcgctgtgaagtaaGATCTGGCTATATCACACAtactggataggagaaaaaaaacactctgggttgtttgcatttctttaaaccagtaaCACGGTAACGTGAGCTTATATTTGCTGGATAcataaacgtaatttgctcttgtGTATCGCCGTGTGCATAGGCTACTTCGTACCAAAACGTCCCATTTAGTAattatgccgtaaacatattcttagtaaatccattcattcacagaaaaagaaccaagcaggcctgctttTTTGCACGATTCAAATTTTTGTTTCAACGTTTggagattgaacgtgccccagGCAagtatcctggaaatgtacttccgttgatccagacaaCCAATTTTGTAACACTAAAGTATGCCTATTCTGAGTAAGATGCAAGTAGCCTGGATATTTTGTAAATGATTGTCAAGCTTGTTCAATTCATTCTATGAAATACTTATGGATGgtcacagaaaatacaaataaatgttaaataaatgttgaaatgaaaaGTGCCTAGTGTCTATGccccattcattcattaattcattcattcaagttCGATTGTAACGTTTACACTGAAGAAACTTGAACTTAGCTAAAATAGGCTTCAGGAACAAAATACAACAACCATCAAACATAACGTGTGAGGAATCTGTTTCATATTTTGCCTTATCAATTAAATTTGCCTCTGCAGCATGGATGTATGCATGCAGTCAATTAAGAGCCATTCAGAGCACAACTTGGAGAACAGACTACTTTGATCGTTATTCAAGGGGTGTAAGCGGCACTGGAATGTAATTTTACAGTCAAATTAATACCAGACAGGTTTTTGATAATGAATCACTTGTTATATAATACTCTTTTTCAAGTAGAACCTCGAGCTATTTTAATAGAAACGGAAAAACAAGAATAAGTATGTCTTTCATAAATGTATAACCCCCCTACTCAGGAACTAAATGCACTGAACTGTTGTTGCTCAATGTTTTACCCGTCATCATCGCTCCTTCCTTTAGCTTAGCTGGCAGATGTGTCAATCATTACatcgctgtggagataggtctgcaatgcgagactagccaGTCGTCAACATGGATTGAACGGACTCTGACTGTTATCTTTCACATGGCAGGGCGGTGGAAAAGTAACTTATCTGACGGTTACATGAGTGGAATAAGCTCCTGTCCTCAGCTTCATCACATCAGagaaagaggagagaaggcTAGCAGTGACCATGGAGACTGGATTTCACTCTCTCTTCACCACAGCTGGCCAGCTGCCTTGGTTGCTTCTGACTCTGTTGACATCATGGACAGTCTTGTGTTCAGCAGATATAAAGCAGACAAGATGGCCATTATATTCCCAGAAGCCAGTTCTTCTTGCCTGGAATGCCCCAACACAGGAGTGTGTCCCGCGACATCGCGTAACTTTATCTTTGGACCAGTTTGACATTGTGGCATCCCCCAATGAGGGCTTTGTCCGGCAGAACCTCACAATTTTCTATAAGGAGCGCCTTGGGTTGTATCCCTATTATGAGCGTGGTGGCACTGCAGTGAATGGAGGTCTTCCACAGCTTGCCAGCCTTACTCAGCACTATGAAAAGATGCCTGAAGGTTTGCAAAAATATATACGTGAGCCAGAGGCAAAAGGTTTGGCTGTAATTGACTGGGAGGAATGGCGACCATTGTGGATCCGAAATTGGGATGTTAAAGATATATATCGAAATAAATCTCGTGAAATGGTGGCCAAAAAGAACCCTAAGTGGACCCCAGAACAAGTGGGAAAAGTTGCACAGCAGGAATTTGAGCTATCAGCTCACAAATTCATGCTGGGGACTCTGAAACTTGCCAAGAATTTGAGGCCCAATCAACTGTGGGGCTTCTACCTGTTTCCAGATTGTTACAACCATGACTACATGAGTGGTCTGAAGAACTACACAGGCAGCTGTCCTGTTGTGGAGATGGCCCGCAATGATCAACTGAACTGGTTATGGATGGAATGTACAGCGTTCTTCCCATCTATATACATAGGTTCTGTACTAGGCTCTACAAATGATGGACGCCTCTTTGTCCGAAACAGGGTAAAGGAGGCGATGCGCCTGGCATCTGTTGGGGATGGATTAGCACGGCCTGTTTTTGTTTATACCCGCCCTACTTACATCAATCAGATGACCCTCTTAACTCAGACAGATCTGGTCTCCACCATTGGTGAGAGTGTTgcacttggagctgcaggtgtAATTTTCTGGGGGGACACCTCCTATGCAAGCAGCAGTGCCAGCTGCTCCATCCTGAATGAGTATCTTCAGGGACAACTGGGCCGGTACCTCATCAACGTGTCTACAGCAGCAGAACAGTGCAGTCAGGTGGTGTGTAAATCACACGGCCGCTGTTTGCGCAAAATACCAGACAATGATGTGTACCTGCATCTCAGCCCTGTAACGCACAGCATCACCAGTCAGGGTGGCCGACTGAAGGTTACAGGCGTGCCTGGCCAAGCAGAGCTGGCTCTTTTCCGCACACACTTCCAGTGCCAATGCTACAGTGGGTACAGGGGTGAGGCCTGTGCTCAGAAAGAAAAAGGGCAGAATAGAGCCTCCTCTGTCTTAGGGACCTGGCCTCTTTGCCTTTTACTCCCACTAGGACTCCTCACTCTGCTACACTGAGGAAACTGAGAAGCCCCAAACTATTCACTGCTTCTGCCAGCCCTGAAAAGGACAGTTCAGACTTTTCAACATAAAGGTGATAAGTTACTGCACATTAGTAATGCTGATGCATTGACAACAGCAGACTCTCAGACACTcctgtcattttttatttatttttttatttttataatttatctcaaacaatcaacaatgttgcaaaagaaaaaaaagaaaaattaaaaccacaaaataacaacacaaacaatcagAATTTACCAAAGACCaacaaaattaataataaaaaaaaaaaggataagttCGAGAAGGAGCAGGTGGACGCATACAGCTTATTAGGGTCCTTCCCC

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004415 hyalurononglucosaminidase activity molecular_function

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53269 lncRNA upstream 343004 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 410560 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 460464 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 467652 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 474022 17715412 ~ 17722348 (+) True G39633
TU53572 lncRNA downstream 247555 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 342863 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 369299 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 372390 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 372690 18573982 ~ 18574211 (+) True G39927
XM_039798908.1 mRNA upstream 1459 18189582 ~ 18194911 (+) False tusc2b
XM_039798907.1 mRNA upstream 1459 18189583 ~ 18194911 (+) True tusc2b
XM_039799020.1 mRNA upstream 8619 18177743 ~ 18187751 (+) False rassf1
XM_039799021.1 mRNA upstream 8619 18183035 ~ 18187751 (+) True rassf1
XM_039797078.1 mRNA upstream 24240 18158189 ~ 18172130 (+) True rad54l2
XM_039799106.1 mRNA downstream 5337 18206629 ~ 18211949 (+) True abhd14a
XM_039799107.1 mRNA downstream 5337 18206629 ~ 18211949 (+) False abhd14a
XM_039798324.1 mRNA downstream 14414 18215706 ~ 18226578 (+) True LOC120557740
XM_039798326.1 mRNA downstream 14544 18215836 ~ 18226578 (+) False LOC120557740
XM_039798327.1 mRNA downstream 14581 18215873 ~ 18226578 (+) False LOC120557740
TU53438 other upstream 2444 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 2444 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 269483 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 302950 17893293 ~ 17893420 (+) True LOC120558252
TU53107 other upstream 587154 17607930 ~ 17609216 (+) True G39581
XR_005639014.1 other downstream 14414 18215706 ~ 18226039 (+) False LOC120557740
TU54005 other downstream 1123537 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1415889 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other downstream 1415889 19617181 ~ 19632006 (+) False LOC120557344
TU54184 other downstream 1650256 19851548 ~ 19859341 (+) True cenps

Expression Profile