RNA id: XM_039798912.1


Basic Information

Item Value
RNA id XM_039798912.1
length 2089
RNA type mRNA
GC content 0.43
exon number 2
gene id cav3
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16738036 ~ 16741512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtatacactgcctgtgtgtgtgtttgggtgccTATGTGTGTGCAGGGCGGGGGTCAGGCCTCCATTTTTACCAGGAGGTCTGCAGCAGCTGTCCACTGGCATGCAAGAGGGAGCGCCACAGTGGTGATACAGGGGTTCAGAAGTGAACCGAGGCAGCTCCGTGCAGATTGATCCAGGAAGATTTACTCTCACCATCTTCGGCCCGTCAAGGACCTGCAGCCCTATCATGGCGGATCAGTACCAGTACAACACCAACACCAATGAGGAGAAGATTGTGAAGGATAGCCACACCAAGGAGATTGATTTAATTAACAGAGATCCCAAGCAGATCAATGAGGACGTGGTGAAGGTGGACTTTGAGGATGTCATTGCAGAGCCTGATGGTACACACAGTCTGGATGGGGTGTGGAAACTCAGCTACACCACCTTTACTGTGTCCAAGTACTGGTGCTACCGCATCTTGTCTGCTGTCTTCGGTATCCCTGTTGCTCTGCTGTGGGGCTTCCTGTTCGCATGCATCTCCTTCTGCCACATCTGGGCCGTGGTTCCCTGCATCAAGAGCTGTCTGATTGAGTCGCAGTGCATCAGCCGCATCTACTCTCTCTGCATCCAGACCTTCTGTGATCCCTTCTTTGAAGCCCTGGGCAAGATCTTCAGCAGTGTGCGTGTTGCACTGCGCAAAGAAGTCTAAGAACTCACACAGTAGTGTTTATAGTATGATCGGATGAAGTGTGGTATCTTTTTATACACCAGAAGATCAGTCCTGGCATCTTGCTTACTCCCTGATACTCCTCCTCCACCCTTCATAATATGCTGTTCCCCGCCCACCCATCCTCAAGCTCTCAGCACTGAGTCCTGACATGCCCGGTGTGCCACCAGAAGCTCCGTGACAGCTGCAGCAGGCAGCGTGGTTCTGTGACAGCTCTGGCACTCCTGGAGGGCTCAGTGCTCCTCACTGAGTGAGAAGAGGGCCGCTTGCAATGAGGAAGATGTGTCTGCCCTCATTTATTTGTATCACAGAAGCTACTCATTCTCAACAAATGAAATGACCTCCCCACAATTGCTGCACCTGTGGACAATGCTGCCTGTATGCATTACATTTGGCCATTTTTAAAAGTTATATTGATGCTGTATATTGCTGTGTCTGGTATTATTTAActttatattgttttaattGGATTTGACAATCATGTATGTAACCTTATTTTAAAAATTCTAACAAAACGAATTGAATGGAACATTTTTTTCTCTACATATTTATTTGGTAATTAGTGATGACTCCATGGTAACTAAcagatacattttctgtttggAACCAACCATGCAGATAATCTACTTCCTTTTATCAAAGTGTGATGAGTGGAATATTAAACCTACTTACTATTGCACTTTTCAAGTAAGCAAGTATGTGTAAACAAGTATGGACCTACCTACTAATGGAGTAAAGTAAAAACCTCTGTATGAGACCCATCGTAATGTTCCACCgtgttatttatattatttagaAAAGTATAATACCTTTGCTGCTATTGTGCACCTGCAGTGAAGAAAATGTAatgacatatacagtacatggggTGAAACTAATTTAAAGACACTTGATGAAACCTTATAATAAGTATATTGCACCACTGGTAAAGTATGTTCTGTGTATTATTTCAATTTATTTGGAGAGGCttaagaaatacatttttaaagttcaccaaacacttcACCGTGTTTCAGTGATATCTCTTTTGCCAACTTCAGTAGAAATAGTGACCTGGGAGCTGTGACCCACTAGAGGTTGCTGTTGTGTGTGCTTCTCTTTTGTGTGAGATTCATAATTGATGTTTCAGTGTCACCACACCCTTCTTTGTTCATAACCTGTGTTTCTTTCTGGCTGACTCATTCTAGTCCTCTACTGTGCTGGAAAATGCACAGTTAGAatttataaaagcagaaacagCACACTGTGTTGAAAGTATTATTTCACTGGTTAATGAACTGCATTAACCAGTGCAATTAAGGAGCAAATTTGCCAGAACCTGTAAAGAgacattaaatataaaaatacaaccAAAGTACAGCAAGTTCTCCACAAA

Function

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0007520 myoblast fusion biological_process
GO:0045214 sarcomere organization biological_process
GO:0060035 notochord cell development biological_process
GO:0042383 sarcolemma cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component

KEGG:

id description
K06278 CAV1; caveolin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52557 lncRNA upstream 158314 16579085 ~ 16579722 (+) True G39143
TU52544 lncRNA upstream 181831 16552684 ~ 16556205 (+) True G39134
TU52517 lncRNA upstream 215699 16517536 ~ 16522337 (+) False G39116
TU52514 lncRNA upstream 227851 16503438 ~ 16510185 (+) True G39113
TU52459 lncRNA upstream 486311 16235014 ~ 16251725 (+) True G39076
TU52617 lncRNA downstream 40899 16782411 ~ 16782618 (+) True G39195
TU52618 lncRNA downstream 43236 16784748 ~ 16785065 (+) True G39196
TU52619 lncRNA downstream 44319 16785831 ~ 16786051 (+) True G39197
TU52633 lncRNA downstream 77234 16818746 ~ 16823256 (+) True G39210
TU52709 lncRNA downstream 226344 16967856 ~ 17046696 (+) True LOC120556687
XM_039798588.1 mRNA upstream 2730 16733386 ~ 16735306 (+) True LOC120557897
XM_039796316.1 mRNA upstream 8020 16724159 ~ 16730016 (+) True gpr61l
XM_039798960.1 mRNA upstream 15219 16718280 ~ 16722817 (+) True parp3
XM_039796275.1 mRNA upstream 21809 16683808 ~ 16716227 (+) True grm2a
XM_039796276.1 mRNA upstream 22236 16683808 ~ 16715800 (+) False grm2a
XM_039797180.1 mRNA downstream 155558 16897070 ~ 16906824 (+) False thumpd3
XM_039797181.1 mRNA downstream 155600 16897112 ~ 16906824 (+) False thumpd3
XM_039797183.1 mRNA downstream 155668 16897180 ~ 16906824 (+) True thumpd3
XM_039797184.1 mRNA downstream 166330 16907842 ~ 16916563 (+) True LOC120557149
XM_039798758.1 mRNA downstream 176309 16917821 ~ 16962625 (+) True LOC120557990
TU52524 other upstream 194456 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 302807 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 687606 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 771929 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1090185 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 370601 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 451709 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 451709 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 451709 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 451709 17193221 ~ 17198217 (+) False srsf3b

Expression Profile