RNA id: XM_039798921.1


Basic Information

Item Value
RNA id XM_039798921.1
length 4714
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC120558072
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17097697 ~ 17102777 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACACACCCTGCTCCGCTGTTTGCGCCCCTCAGATCAACTATCAGATGGTTGCATTTCCTCATCAGTGCGGACCGCAGACAGGCTTTTCCGGTCATTCTGTGCGTCCCGGTGATCGCTGCAGCTGCTGTGATGAAGAGGATGAGACTGTCCTGTAGCGGATCATCTCCAAGACCGGACTGTTGACGACTCTCCCCTTTTCTCTTCGGATCTTAAGAAACCGACAAAAAGCTCCATGACTCTCCACTGTGAAGACTAGAACACATCCAGACTGCTAGTTTATAATCCTGACAGGATGGGGGGTTCACTCTGGATTTCCCATGGTGCCACCAAAGTGTTCAGAGGAAGGAGCTTCATCACAGTTCTACCTCTGGCTTTATTGTTGCCAACAGTGAGAGTCAGTGCACAGTTAATAGGAAGCCCTCTGGACTGCAAGACTTGTGTGTGCGCCAGCAACATCGTCAGCTGTTCCAAAATGAATCTAACCAACGTTCCCACCACTCTTCCACAATATACAGCTGTTCTGGACCTCAGCTTCAACACCATCACCAAGCTACGTGCTGAGTGGACCACTAAAACACTCAGCAGACTACACAGTCTGCTGCTGAGCCACAACAGCCtcaccttcctctcctctgaggcgtttgtgtatgtgacaaagcTACGTTACTTGGACCTTTCCTCCAATGGCCTCCGCCAGCTGGACGAGTTCATTTTTGAGCCGCTGGAGCACCTGGAGGTGCTGCTGCTTTACAGCAACCGCATCTCTCAGATAGATCGCACTGCCTTCTCTGGCCTCGTCAACCTGCAGAGGCTCTACCTGAGCCAGAACCAGATCTCACGTTTCCCTTTGGAGCTGGTGAAGGAGCGGAGCCGGCTGGAAACTCTTAGACTGCTGGATGTGTCCTCCAACCGAATCAAAGCCCTGCCCCTCTATGAGCTTCAGGCTCTGCCCGCCTGGATCAAGAATGGCCTGTACTTCCACAACAACCCTCTGACCTGCAGCTGTGAGGTGCATGACATGGTGGCACGTTGGTACCTCAAGGGGCTCAGCTCAGCCACGGACTTCAAGGGCAGCCACACATGTGTGTTACCAGGCCAGCAGAAAGAGAAAATGGTCATACTGGACCTGGACAAGGTCTATTTGAACTGCAGTGAGGTCAAAATGATGGACAAAGAAACCTATCTGGAGCAGTTCCTGCTCCTGGACTGTGACACCAGGGAGAAGGACATGATGAAGAGCTGGGTGCTGCCTGGAAACATCCCACTGTCTCCAGCACACAAGACTGCTTTGATGCGTCCAGATGGCAGCCTCCAGATTGGGCCCCTGAAGGCAGAGGACTCAGGGGTGTACACCTGCTATGCCACCAGTGACTCATTTAATGAGACGCTGTATGTATCTGTAATGGTGATTAATTCCACCAAGAGTGGTGGACTGGAGAACCTAAAAACGGCTTATACCACCCTCGTAGCATGTCTGGTCAGTTTAGTTATGGTTCTCATCTACCTCTATCTCACACCCTGCCGCTGCGCCTGTTGTCCAGGTCAGGGCCTGAATAAAAGCGATCCCAGAGACAGCCTCCACTCTTCAACTGTTAGTATCACCCAGACACACGAGGAGACGGGGCAAGAAAGAATGGAAGGCGGGGGCTTCGCCTACAGACATGTGGCCTTTCTGCAACCCAAGGACCAGCTGGAGCAGAACGGGAGGTTGAACCCAATAGGCGAGGAAGACGAGGAGTGGCAGGGGGACAgcagggagagaaggaggtctGACGCAGAGTCTGTCAGCTCTGTGTGCTCCGATACCCCCATGGTGGTGTAAAAGTCAGCGGCACAGCCTGGAGGGTAAGACAGTGATGGCTCGAACCATGTGGCTATTCCACAGAGCAAGAGTGCAAGAATCAAAAGCTTTAGTTGGCTCTTACAGCTGTTGGCACTGTTACAGTAGCATGTACTGTTAAtatatgataataatattataatattagagCAATGTCttgataaaaacaatttaaaacaccCCCAAAACATTCTGATAATGCAGAGAAATGTGGTTAAAATTATTTGTGACCTAAAATATTTTGATGTATGCATTTATCTCAGTTGTCACACATGATTGCAATTGTTATTTCTATTACGTAACCTAAATCACCTtttgaaaaatgcaattaatgCTTCTATTGTTTTCAAATAGTTTTTCGTTTTACTGCAAATCATTGGCTGGCCCTGCAAGAAATTGATATGCAAGTAAAAATACAAgactttaaaatatttaaacttaaaaaaagtcCTACTAACTCTTAGCACTAAcagcagcatgaaaacagcttgCTTCTGAATAACCTGAGGCTGTaatttaaataaaggttatCCAGCTTTTATGCACTGGGGATCACAGCACTACAAAGATTAGAAGTTTTAAAGATGTTGGACAAAGGTTGCTGCTTGAAAGAGAAGCTATTTTTTATGCAGAGTTTGGAGAGTATTAACTCTGCAAGATGTTTAATATTTATGCTATGTTTTACATTCCTGTTTGGTTTTGTCAGCCTTCACAGCACACAATACTGTAAGGATTACTCTTATGCAATTTTatctatttatattattttagatTTGAGTGTGACTTAATGCTCAATTAATAATATTTGTGTTTGCAGTCCTtgagtgttttaaaaaaaaaatactacttTGTATGAAAGTCTATTTTAAGTAATTTGAGATTCCGCATAATTACAGAATCATTAACCCAGCCTTTTctgaaacattgtattttttactgTAATTCACTTTATTCAGAAATCATAATTTCTGTCAAATTTAGTTTGAAATGTTTCTCCATAGcaagaaaaaacagacaaacagataaACCAGACTACATCCAGTGTTGTGGCAGTTATTAATATAACAATGACCACATACACACTGTGGGTATTACTGGCTGATATCTAGTTGTTTACATCAATATAAATACAACTATTTACTGTTAACAGACAAATGTACATGAAATATCGATTTAAGATTAGCCAGTTATTTGACACAGTAAATGTAATTGCACGGTACGTTCCAGGTGACACTGcaaaaaatatgaaacaaagAAACACCAGAGTTCCAGTAATTGTTAGACAAAGATTTGAATTTCCTGATTGTGTgcttattttaaccattttagGCCTAATATGCAGTAATTCCCATTTTTAAAGAGACTTCATTAGTACATTAACATAACCTGAAGGGTCTGGAAAATCGTCACAGTTAAGCGCTGTCCACTGTCTGTGTACTGTAGCTGCTGCAGATTCCAGGCTCAATTGGCTCTAACTGTTTAGAAAGGGtttatcattttaaaaaaaaaatactataatGCCAATTCTAGTTTAGACTGGATACATGCCATGCGctcaaattacaaaaataaccCTACTTTATTGTTACGGTGCAGTGAAAACAATatgttacagttacagtaatagcAGCTGGGAAGCATTGCCCAAGGGAAACAACTGAGAGCGAGTACCAAATAGTGAATGCTTCTGGGCATTAGTGCCCAACCCTCAACAAATCACTAAATGCCAGCCAGCCAACCAGCCAGCCAGCAGTCTCATAAACACAGTCAGAAATAGCAGCTAGTTGTGCAACCAACACAGGCTGCCTGACGCAGACGAAATAGCAAGAAGTAGCAGATTTCAAACACGTCTTAATTTCAGTTACGTTTCTGAAATACCTTTCGATTGTTGATTTTAGAGGCTCACATCATAACTTGAATGGTGTGAGAACAAAATGGTATATGCCCACAAGGATATAAATCAGGAAATAACAGAAAATAGAGACCCGTACAAATAATGTTATCACAAACTTAAAGTCACTTTGGCTCCGTTATTGATAAATGGTGGTCACAGAACACAGTTTAAAGTAACACTActggggtggcctctagctcacccagtaagagcgtccGCCCCATGGCGGCTGAGTCCCGCAGCGGtgcgggttcaaatccgacctgctgccccttgctgcatgtcatcccccatctctctcccccttttcccttttctatccactgtcactctataataaagggaaaagcccccaaaaaagaatctttaaaTTAACGctactaataaaaatataaacataattattaatattactaattaaataataataaaagtgtgAAGCAATTTAACAGCAAAACAAACCATTCCCAGATGATAGATGTagcatgtacagtaaatgtacttttagtTTGAAGGAACCATTGTTTTTATGCGGTGACTTCTCATGGTGCCTTTTCAAGATAATTTAGGTGACTCAACACCTTTAATAAATGTATCTGTGGGAATTATAGCACTAAAATAGTCATGACATCGTGAGCCTGGTCTAATAGTATTATAAGCTACATCATGAGAAACTTCATTGACTTGTATCTCTCAAAAGGGGAGGATATCTACTGTATGCTAATGTTGTACATATGTCTTTTTCCATCTAAAACTGACTCATTATAACCAAAGACTAAGTTACATGCTAAGAATGAATAATCTACATGTTCATTGTTCACAGTTATATTGTCATTAGTATGTTGAGGTTACCTTCTGTGTTAAGCCACAAActtgtatataatatatgcaaTCCTGTATAAGGACATATTATTTTCTGTATCTTGTCTATTATTGTATTGTTCCTGTATTTCATAAACTACAAAAATATGGCAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52750 lncRNA upstream 15121 17080666 ~ 17082576 (+) True G39308
TU52745 lncRNA upstream 43746 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA upstream 43746 17050659 ~ 17053951 (+) False G39304
TU52742 lncRNA upstream 49332 17047935 ~ 17048365 (+) True G39302
TU52709 lncRNA upstream 51001 16967856 ~ 17046696 (+) True LOC120556687
TU52816 lncRNA downstream 55126 17157903 ~ 17159236 (+) True G39358
TU52918 lncRNA downstream 185662 17288439 ~ 17289516 (+) True G39427
TU52924 lncRNA downstream 195215 17297992 ~ 17298192 (+) True G39433
TU52930 lncRNA downstream 204278 17307055 ~ 17307707 (+) True G39437
TU52926 lncRNA downstream 248929 17351706 ~ 17360942 (+) False G39434
XM_039797450.1 mRNA upstream 54884 17034719 ~ 17042813 (+) True eps8l3a
XM_039797451.1 mRNA upstream 54884 17034720 ~ 17042813 (+) False eps8l3a
XM_039798839.1 mRNA upstream 65003 17027709 ~ 17032694 (+) True irf6
XM_039798840.1 mRNA upstream 65003 17027709 ~ 17032694 (+) False irf6
XM_039798841.1 mRNA upstream 76957 17018950 ~ 17020740 (+) True LOC120558021
XM_039798075.1 mRNA downstream 24618 17127395 ~ 17144727 (+) True LOC120557584
XM_039798081.1 mRNA downstream 90374 17193151 ~ 17197749 (+) False srsf3b
XM_039798083.1 mRNA downstream 90374 17193151 ~ 17196040 (+) False srsf3b
XM_039798082.1 mRNA downstream 90375 17193152 ~ 17197749 (+) False srsf3b
XM_039798085.1 mRNA downstream 100874 17203651 ~ 17208659 (+) True cdkn1a
TU52524 other upstream 554117 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 662468 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 1047267 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 1131590 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1449846 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 9336 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 90444 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 90444 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 90444 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 90444 17193221 ~ 17198217 (+) False srsf3b

Expression Profile