RNA id: XM_039798970.1


Basic Information

Item Value
RNA id XM_039798970.1
length 5664
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC120558102
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15991734 ~ 16011506 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTAGGACGCACACACGATCAGCTGAGCAGCGTTTTCCCTCTCAGTGGAAGATTAGACAGAGCTGTTGTTCAGTcagactcactcactcactctctgtTTGCACAGTTCAGCTGAGTTTTTTCCACGGTATTTAGCTTTTTGTGAACCGAAGCTGCTTTCGTGGACGAGATGTTGGAGATGGTCGCTTCGAAAAAATGAACACAGACTGCACCAAGCCTTCTGTTGCTCCAAAGCCGAGGTTTGTTTGTCACGCCAGCCTGAagcttccctcctctctcatgTCTGCAGCCAGGGGTCCCAAACCTTCAATCGCCCCAAAACCTAAAGTCACACCAGAGCTTAATGGCAACCAGGGAGGATGCATCAATGGCAGCTTGCTAAATTCAGATGGTGAGGTCGATGAAGAGCATGAGGCAGAGAATGGTCTAAAGAAAGATAAACAATGTAATGCTTACATCCTCAAATCACCACAAAAAGATGGTCAGGGGacagaggatgaagaggaagaggaagaagacatGATTCAGAAGATGGACGATGACTGGAGGTTAACTGACAGTGCTCTAACAGAGGAGGTGGACTCCCTGGAAACACTTTGGGTCAGTGATGCTGGGCTCACAGCTGACTCCGAGGATGCAGTGGAGATGGTTGACACGGACGTCGAAGGTTGTGACGCAGGCGAGGCCCTGGCCGACACAGATGGCCTCTCGGTGGGAGACATTTCTGTTAATAGCATTGATGAGGAGGCAGGCTGCTATTCTGCTGAAAATCAAGACATTAGGCAGGAGCAGGAAAAGCTCCAGATCAAGGAGGATGAAACAGGTACGGCAGATGATTTAACTGAGTCCCTCACAGACGAACCTGGTCTCCTCAGCAATGAAAACGTGAAGGACACTGATCAGAAACAAGTTTTTCTAACAGATGGggaggagaaagaagaggaatCTGCTCCTGATTGTGGCATCACTTGTAACATCCTGAAGTTTAGATGTGGCCATAACGTGAAGGAAAAGGGGGAAAACCTACAGAACATtagtttttatgactttatccCCGAAGACCAGAAAAAGATTGAGAGACACATTGCCGTAGTGGATGATCCAACTCATGAGCCTTATTACGTCTCTTCAGAGGACATTATTAACAGAGAGATGATGCCAAGAAATAACACAGCTCATGGACAACCACAGAGTCCACTTTTGTCTCTAAAAATCAGTGGAGTAGCAGCTGGGAAATATGATGAAACGGCAGAAAATGGACAAACGGAGTGTGTGTCCTCTGAGGATTACGTGGATGTTGGCAACGGTCTTGAGTACAGCAGCTACAACAGTTATGAAAACAAGGAAAGAACCAATCAGAAAAGGACTGAAGAACCCGAAGCTCAGACAGCGGAGGCCTTGCTCGATCATGTGGACTGCCAGCCGAGGTTCAGGCTGGTATCCATCTCAGTGCCGACGGACACTGACACCTCGCTGACATCTTCTCTCTCGGAATGCCAACTGCTTTCCCCGAGTGACTCAGATGTCTTTGAGGAAGACCTGGATGGTCACATAGTGCCGTTTCTGGATGACACTTCTGACACGGAGCAGGACATCAGTGATGAGCATGTCTATGAGGAGCCAGGGCACAGCTCTGAGGgtgaaaatgtttttccttttcataaGAGGACAACAGAGCTGCGCTCCAGCTCACAGTCACATCGCATTAATAATAACGTGGCTGAGATAGGAGTGCAGTTCATTCAGAGGCCCTACATGAGTGGATTTGGACAACCTGCACTGAGCAGCAGCCCAATGTTGAGCTCAATGCGGCATAAGAGCTATGGCAAACCCCACTATTTGTCCTTGTACCCCCGCTCCCTCTCCATGGAGGGACACGACATGCCTCTGGGTGTCTACAGCTACATGGATGGATCCCCAAGACAGGGAGGTGCCATTTGTTCATCTGGAAGCTTCTCACGGTGCTCCCCTTTATTGTCCAGTGGCCTGTCCACTCCGACATCTGTAGTGGATATCCCACCTCCGTTTGAGCTGGCCTACATTACCAAGAGGCCCATCACAAAGAGTTCCCCCTCGCTTCTCATCGAAGGAGATTCGTCagagaaaaacaggaaaaagaaaTCCTCCATTAAGCGTTTCCTGATGCTTAAATTTAGGCGGAAAACAGAGAGCAAGCCTGTGGTGGATGTCAACCCGTCCTTGTTTAAGTCCTCAGCAGAGTCCAACCACCACACGCCCAGCAGACTGCTGGATCTAGACAGACGCAGTATCAGTAGCTCTCCACAGCTCAATTCACACTCTGTTAGTAAACCTCATGTTTCATCCGAGCCGGCCTCCACCTTCTTGCTCTACCAggaaagcaaaagaaaagggaGCTCTGTGGCCTTTCTCAATCGCAGCGTTGTCCGGGTGGAGTCCTTTGAGGACCGCTCCCGTGTGCCTTTCACACCTCTGCCCCTGACCAAGCCTCGCTCCATCTCTTTCCCCAACGCAGATACCTCAGACTACGAGAATGTACCTGCCATCAGCTCGGATTATGAGAACCTTCAGGTCCCACAGCGGAGGCCCATCCGACAGGTGCCATTCACAGACTACTTTGACCGTCCCAGTCGGGCGCTGTCCCCTTCCAATGACACCGACGGTTACGTGGATATGAGCAGCCTCCCTGGGTTCAAGGGTAAAACTCAGTCACctgaacaggaaacagaaagTGCCTATACAGAAGCCTACAACGTGTGTTCGGTGGCTGTCTCTCCACAGACTGTCTCTGTGGGTGATGTCGGGGGAGAGATGGCGGGTGAGGAAGACCAAGGACGCACctctgaggaggaagagggaggtgCAGACAGTATTTATGAGAGACAGCATGACGGCCGATCCAGAGCCTTTTACATCGCGAAAGAGCTGGTGGATACTGAGAGATTACATGTGAAAGCCCTCAAGCTCCTCCAGGAAGACTTTCGGGAAGCAGTGGGGGCAGCAGTCGGGGACGAGGGGGAACCTGTGTTAGACGAAGAGAGGCTTCGAGAGATTCTCAATGAGCTGCCTGATGTTTACACCCTGCACCGCCGAATCCTCACCGAGCTGGAGAATCGAATCCGACACTGGGAGGAGAGCCAGAGGATTGCAGACATCTACCTGTCTAGAAAAGCAGAATTTTTGGTTTTCACCACTTATATCGGCCACTATGATCGAAGTATGAGCCTGCTGGATGACAGCTGCCGATCTTCACCTGCCTTTGCAGCAATTGTTCACCAGTTTGAGCAGAATCCAGCTGGAGAAAAAGTGTCTCTGAAACATCAGCTCCTGCAGGTCATTGTGCGTGTGGCTCAGTACCGCATGCTCCTCACTGATTACCTGAACAACCTCTCCCCCGATTCCAAGGAATATGAAGACACCCAAGCTGCTGTGGCTGTCATATCTGACATCGCAGATCAAGCAAATGACAGCATAAAACATGGGGAGAACTTGTTGCGTCTGGTCAACATAGAGTACAGTGTTCGTGGCCAGCGGGACCTGCTGCAGCCTGGCAGGgTCTTTGTGAAGGAGGGCACCCTGATGAAGGTGAGCAGGAAGAGTCGACAGCCCCGCCATCTGTTTTTGATGAATGACGTGCTGCTGTACACCTACCCTCAGCAGGATGGGAAATACAGACTGAAGAATACTCTGCCACTCACTGGCTTGAAGGTCAATAAACCCATCATGGAAGATGTCCAAAATGCACTGAGGATTGAAGGAACAGACATCTCCATCACTTTGTCTGCAAGttccttcattgaaagagaGGACTGGTTTTACACTCTAAGCCGCACTGTGACTGAACATGCCAGGGGATCTGTAGCATTCAACAGCTGCTCAGGAGAGGCCAGAGATCGTCTGCGGTTGACTCTAGGAGAGAAAGCCCCTACACTTGTTCCAGTCTCACAAGTGATGATGTGCATGAACTGCACCTCAGATTTCAGCCTCACTCTCCGCAGACACCACTGCCATGGCTGCGGAAGAATTGTTTGTCGGAGCTGCTCCAGGAACAGATATCCACTGAAATACATGAAAGACCGCATGGCCAAAGTGTGTGATCACTGTTACAACGAGCTAAAGAAGAGAGGGGCAGATGTGTCTGCACTGTCAGGTAAGAGTAGCCCTCGTCCAAACCGCTCCAGTCGTCCTCTCTCTGCTGTGTTCCAAAACATTCATCCTCCCAACATCTGGAGACATCGGAAAGGCACTGCTTCCTTCACCCAGGTGACAGTGTCAGAGGAGGGCTCCATTAGTGGCGCTCTACAGCGCAGCAAGAAGAGCAAGAGGAACTGGAAGAGACTGTGGTTCCTTCTAAGAGACAAGGTGCTTTACACCTACCGAGCCCAAGAGGAGAAAGTAGCATCTGAGAGTTTACCTCTGCTGGGCTTCACAGTAAAGCTACCTGACAAGCAGCTGGGAGAGGAGGAGTCCAACATCTTCCAGCTTTACCACAAAAACACTTTGTATTACTCCTTTAAAGCTGAGGACAACTACACAGCCCAGAGGTGGGTAAATGCCATGGAGGAAGCCACATTTTTATAGGATCAGCTACTCTGGGTGAGTTGCCTAAAATAGAAGTCAGCTGCCTTTCTTCTGCTACAGACTGTGAAACCAAAAGGGGAAGATGGGGATTAAaaaccattttttattttatgtctgCAAGTTGTAACTTGTATGGCTGGACtgaataaaagaagaagaagtgttCTTTGAAAGGGGACACAATTACCTACTTTGTCAACCTCCAGTGTCCCCTGCCTGCTGTTACAGCAGGTGTGATGCTGAGAGCCACGAGAGGCGTTGGCACAGATACCTGCCAGTGTGGAGCATTACATTGATGTGACCTGAATTTCCTGCACCGGCTCCAAAGCATGGGGAACATTATAGATTTTTGGAAAAGAAAGATATTCTAtgattttaactatttttttaacatttcaaatatttcaaaaacaaaaaagaaaaaactgaacAAACATACACTTTAACCACAGTCATTGTCGTTTCCAGAGAGgctaaaaaaaatagtaatacaTTTCAACCTcccttaaaaatgcccaaatctGGAATGGCCTGATCTTCAGTGAAAAATGAATTAGTTATGCCTTTATTTCAACAGGTGTTCTTCCACTGGATTAAATGCATCTCTATGACTAATACTTTGAAGCACAGGCTGTATCAAAGAATGAGTAATTTTATATGTATAAGTGTCTGCAGCTTTTCCGTGCACTGTGTTGTTGGAGATAGCCCTGTCAGTGAATAAACAGTTTCTATGCTTTTTGCACTAACATAAAAAGGAATGAACATGAAATATGAGTGAACATTCATCATAGAGGCCAAAAGCTTCAGCTATTGtactacacttttttttttgtaatttactttacatacttttttaaatgttgccaATTATGTCTTTATTGTCATAAatatctaaaacaaaaaaagtataatgTAAATTCTTATTTGTATAAAGACTCCACACCCGGTTGTGCACAGTTTGTTGCCCCGGACGGAACCATAAATCACTGATTTCACTGATGTATAATCGGTGTCTTGGACTTTGTACTGTACTTGATGATTTATTAAGTTTGAATTTCTAACActattattttaaaatcaagtaaaggCGGCtttaacaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52310 lncRNA upstream 6638 15984624 ~ 15985096 (+) True G38966
TU52303 lncRNA upstream 54650 15936341 ~ 15937084 (+) False crbn
TU52300 lncRNA upstream 70112 15919430 ~ 15921622 (+) False LOC120557201
XR_005638940.1 lncRNA upstream 70118 15919385 ~ 15921616 (+) True LOC120557201
TU52290 lncRNA upstream 76833 15914539 ~ 15914901 (+) True G38948
TU52394 lncRNA downstream 145207 16156713 ~ 16158362 (+) True LOC120557902
TU52395 lncRNA downstream 145207 16156713 ~ 16158362 (+) False LOC120557902
TU52396 lncRNA downstream 145207 16156713 ~ 16158362 (+) False LOC120557902
TU52400 lncRNA downstream 145207 16156713 ~ 16158362 (+) False LOC120557902
TU52402 lncRNA downstream 145207 16156713 ~ 16158362 (+) False LOC120557902
XM_039796380.1 mRNA upstream 17497 15965402 ~ 15974237 (+) True ccdc174
XM_039798755.1 mRNA upstream 31454 15952560 ~ 15960280 (+) True tatdn2
XM_039798754.1 mRNA upstream 31885 15948449 ~ 15959849 (+) False tatdn2
XM_039798752.1 mRNA upstream 46182 15942764 ~ 15945552 (+) True vhl
XM_039796379.1 mRNA upstream 54637 15923321 ~ 15937097 (+) True crbn
XM_039798644.1 mRNA downstream 5473 16016979 ~ 16034090 (+) False prkcda
XM_039798645.1 mRNA downstream 5474 16016980 ~ 16034962 (+) True prkcda
XM_039798370.1 mRNA downstream 24468 16035974 ~ 16039274 (+) True rft1
XM_039798371.1 mRNA downstream 28307 16039813 ~ 16041213 (+) True mustn1a
XM_039796384.1 mRNA downstream 38172 16049678 ~ 16060330 (+) True eefsec
TU52306 other upstream 25627 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 343883 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1117275 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1175298 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1653974 14335389 ~ 14337760 (+) True LOC120557952
TU52330 other downstream 38399 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 421732 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 506030 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1100607 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 1181715 17193221 ~ 17198217 (+) True srsf3b

Expression Profile