RNA id: XM_039799093.1


Basic Information

Item Value
RNA id XM_039799093.1
length 977
RNA type mRNA
GC content 0.41
exon number 4
gene id rfesd
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10421844 ~ 10424787 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAATGTTATGGAGGTGTTGTGGACTTAATTTAAGATGACAACTGTGATGGGAGGTGCCAACTAAATAATCCCAGTGACTAAGCCAAACTTTTCATGTGTAGTTAAGACTTCAGTTGAATTTCTCACCCGGAAAAACAGAATATCGTTTTTTATTGCAGCATTTCACAGAGCCATGGAGAAGGAGCAGCCTGGAGGACTTCATTTTGTGGGGAAGAAGGATGAACTTATTGAAGCAAAGCGCTCTTTCAGAACACTAGAGGGTCGGGATATACTGATCATTTACCACCAGACCGTCTTCTATGCAATGGACTCTTACTGCTATCATGCTGGGGGAGCACTGGAGAATGGAGACATTGAGGAAATTGCCGACAAGCTGTGCATAATTTGTCCAAAACACAAGTACAAGATCTCTCTTGCCGACGGGGAGGGCATATATAAGGGCACCGACCCCAGGGAAAAGCCGCCTGTGCCCAGATGGTACTCCAAGGGTGTGAAGCAGCGGATCCACACGGTCACCGAGACCAATGGGGATGTCTATGTCAAGCTCTCTGAGGACACGTGTTGGATCGAGTCAGACTTCTACCAGGGAGAGAAGGGCAAGGTGGAAAGGGCCAAAGCTGCGGCAGCTGAGAAGAAACTTAGTAGTGTAAATGATTGATAAGGATGATTGCATCCCCTAtagtttttaaattttatttaattttatttttaatttatcttGAAGGAGTTTTCTATTGTCTCCCACGATCTCCTCTAAATGAATGCATGATGACTCTATAGAAATGATGTCAGTCTTTAAATGTCACATATTTCATGCTTTACCTCAAGTAACCATTAGGGCTTAAAAATGGGTCTGTTTACATTGTTTACAtgatattaaaatgttttagtcAAAAAAATCAAGTCACATATTGCCATGTTAGGTGAACATCTGGCATCTCAAAACAATCATGTAAATAAAGTTTTTATGGATACA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50031 lncRNA downstream 25589 10387917 ~ 10396255 (-) False rhobtb3
TU50017 lncRNA downstream 110690 10310109 ~ 10311154 (-) True G37276
TU49974 lncRNA downstream 119333 10293098 ~ 10302511 (-) True G37245
TU49998 lncRNA downstream 151433 10257259 ~ 10270411 (-) False G37258
TU49994 lncRNA downstream 161484 10257259 ~ 10260360 (-) False G37258
TU50051 lncRNA upstream 30048 10453961 ~ 10456420 (-) True G37305
TU50074 lncRNA upstream 64887 10488800 ~ 10490052 (-) True G37321
TU50126 lncRNA upstream 128380 10552293 ~ 10553381 (-) True G37361
TU50133 lncRNA upstream 236873 10660786 ~ 10661268 (-) True G37364
TU50216 lncRNA upstream 542644 10966557 ~ 10974888 (-) True G37418
XM_039798072.1 mRNA downstream 1938 10395688 ~ 10419906 (-) True rhobtb3
XM_039796783.1 mRNA downstream 103334 10294535 ~ 10318510 (-) False cast
XM_039798074.1 mRNA upstream 10287 10434200 ~ 10442069 (-) True ube2r2
XM_039798073.1 mRNA upstream 10287 10434200 ~ 10442068 (-) False ube2r2
XM_039798047.1 mRNA upstream 67403 10491316 ~ 10497248 (-) True nop56
XM_039798048.1 mRNA upstream 77753 10501666 ~ 10520703 (-) True zgc:64106
XM_039797462.1 mRNA upstream 108613 10532526 ~ 10536350 (-) True tpgs2
XR_005638890.1 other downstream 415671 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 1026274 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 1388177 8907782 ~ 9033667 (-) True LOC120558079
TU49573 other downstream 1388272 8906460 ~ 9033572 (-) False LOC120558079
XR_005639075.1 other upstream 68377 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 70290 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 111041 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 508496 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 508496 10932409 ~ 10943628 (-) False fam219aa

Expression Profile