RNA id: XM_039799097.1


Basic Information

Item Value
RNA id XM_039799097.1
length 3542
RNA type mRNA
GC content 0.44
exon number 2
gene id lrrn1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6605370 ~ 6619215 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttaaataattttccttCTCCATCCGTAGGAGGAGCaggcggcggcagcagcagcagcagcggcacaGCGGAGGAATATCAGGGCGACGAACCGGACGGTAGGCAGCAGGTTGGAGATCTCTGTGCAGACCGCACCATGGCTCTTTCCGAGGCGCCCTGTGACTGATCGGATACACAAGCGACACATCGTTGTAAACATCCGCCTGCTGAACCCCTTAGGATACAGGAATATGTGTTCTTAACGCTATTTGATAAGACCGTTCACTTGGCATTATAACATTGATCTTATAGCCTATTCATTGTTGCGTATTGACGCGTGTTCTGGATAAAGGACCTGTGCGCTTGGAAACATCGGACTGGAATGCCAACAAGaTTACTCTGGGGCTCCAAGATCTTGATGTAAAATTCTACCCTCTGCTTCAACTCTTGACCATTTCACTGGACTGGAAGACCTACAGTAATCAGCGGAAAGTCTGGTTGATGACTGTAACACACTCTCTCCCCAAATCATCTGCCCCTCCTCCTGTCCTACACCAGCATGGCTAGACGGAGGTTAAACGGCTTACCTCTAGGCCAGGTATATGCTGGCCTGATGCTTGTATCGATAGGACTATCCTTCGTCCAGAGCAATGAGTGCCCtcagctgtgtgtatgtgagatcCGGCCATGGTTTACCCCTCAGTCCACCTACAGAGAAGCCATCACTGTGGACTGCAATGACCTTCGCTTAACACGCATCCCGGGAAACCTCTCCAGTGACACTCAGGTTCTCCTCCTACAGAGCAACTACATTGCCAAGACCGATGATGAGCTGGAGCAGCTCTTCAACCTGACTGAGCTGGACTTGTCCCAGAACAACTTCAGTAGCATTCGAGATGTTGGCCTTACCAATATGTCCCAGCTCACCACACTTCATCTGGAGGAGAATCAGATCATGGAAATGCCAGATTACTGTCTGCAGGACCTCAGCAACCTGCAGGAGCTCTACATCAACCACAATCAGCTCAACACCATCTCTGCCAATGCCTTCTTTGGTCTCCACGACCTGCTCAGGCTTCACCTAAACTCCAACAAGCTCAAGACCATCAACAGCCATTGGTTTGAATCTACGCCCAACCTAGAGATCCTCATGATTGGGGAGAACCCCGTTGTTGGAATAATGGACTTTAATTTCAAGCCACTGGGCAACCTTAGAAGCCTGGTTTTGGCTGGGATGGATTTGACAGACATCCCTGGAAATGCCTTTGTGGGACTTGACAATCTTGAGAGCCTCTCTTTCTATGACAATAAGCTGGTCCGAGTTCCTCAGAGAGCCTTTCAGAAACTGCCTAACCTGAAGTTCTTGGATTTGAACAAAAACCCGGTGCACAAGATTCAAACAGGAGATTTTAAGAACATGCTGAGACTGAAGGAGCTGGGTATAAACAACATGGGAGAGCTGGTTTCTATTGACCAGTACGCTCTGGACAATCTTCCTGAGCTCACAAAGCTGGAGGCTACAAACAACCCCAAGTTCTCTTACATCAACCGTCAGGCCTTTCGTGATGTCCCAGCCTTGGAGAGTCTAATGCTGAACAACAACGCCCTGAATGCCCTGTATCAGTCCACGGTGGACTCTCTGCCCAACTTGCGTGAGATCAGCATCCACAGCAATCCTCTGCGTTGTGACTGTGTCATACAGTGGATGACCTCCAACAAAACCAGTGTCCGTTTCATGGAACCTCCATCCATGTTTTGTGCCATGCCAACAGAAGTAAGGGGTTTGCATGTGCGGGAGGTGCTGCAGAATAATTTAGCAAACCAGTGCCTGCCCCTGATTTCCCATGATACTTTCCCAAGCCACCTCAACCTTGACATTGGCATGACCTTGGACTTGGACTGCAGAGCCATGTCCCAGCCTGAGCCTGAAATCTACTGGGTGACTCCAATGGGGAACAAGGTAATGATGGACACCCTATCTGACAAGTACAGCCTTAGCAGTGAAGGGACATTGAGAATTTCTCATATCCAAGTAGAAGACTCTGGCAGATACACCTGTGTGGCTCAAAATTCAGAGGGAGCTGACACAAGAGTGACAGCTATACGGGTGAATGGCACTCTGTTAGACAGCACTCAGCTAATGAAGATCTACGTCAAACAAACAGAATCTCACTCTATCCTGGTCTCCTGGAAAATAAACTCCAATGTAATGACCTCTAACCTCAAGTGGTCATCTGCCACCATGAAAATAGACAACCCACATATAACTTACACAGCCAGGGTACCTGTTGATGTCCATGAGTACAACCTTACGCATTTACAACCAGCAACTGAGTACGAGGTGTGCCTCAGCGTCTCCAACATCCACCAACAAACACAGAAGTCGTGCGTGAATGTGACGACGAAGCAAGCAACCTTCGCTGTGGAAATATCTGACCAAGGGACTAACACTGCTCTTGCAGCAGTCATGGGAACAATGTTTGCAATTATCAGTCTGGCCTCTTTAGGAGTGTATATTGCCAAGAGATGGAAGAGGAAAAACTATCACCATTCTCTGAAAAAGTACATGCAGAAAACCTCGTCAATACCGCTAAACGAGTTGTACCCTCCTCTTATCAACTTGTGGGAAGCAGACAGTGAAAAGGAGAAAGAGGGCTCATCCGAGACCAAACCCAGTCAGGTGGACACCACACGCAGCTATTACATGTGGTGAGAACTCTCCAGTGGGAGATAGAGAGACATGTTTCTTTCAGGAGCACAAATATACATACTTGCTTCTTTGTGTAAGGAGACTAAGTCATTTTtgctttcatgttttctgtttgttttcttagTTCTCTCAGACTTGCTCTTTAAAGCAAATGACGAACCAAGATTTTCAGATCTTTAGTGTAGCATATTGCCTTTTTACCTTTTCGCCCATTTTGACACACAATATGGCAGCTTTGTTTAGCTTCCTGGACTTAGTAGTCACTGTGCTTTATTTTTAGTACTTGTTTTAATGAACACAGCATGAGCATTGTCACAGATTCAGTACACAAGCAAAGGAAAAGCTAAAAATCCAACCTGTTTTTGACATGTTACTATGGCAGAACTGTTAGAGACTGCCATCTTTCTTTCTGTTGTAAAACAGTTTCACTGTTGACTGTTGTGCACTGAAATATATATACTAATTTGTCTATCAACACAAATATAAGCTGACAAAGTATGTTTAGACTTGATATACTGTCTATTAAATATTGTTAGCAATTCCTCTGTAATGTTGTATCAGCTATGacttaaattactttttgtaCATTAACTAattataataacataataagTATGTTTAATTTAGACTTTCAGTTTGCAGAGCAGTTACTGTAAACCAGCAATAGAAATATGAATGTTATGAACTAGGTAAATAGATGTAAGCCTTTTTAAATTTCttaaatatttcttttcttattttgctAGAATATGTCTACAATCACTGGTTTTGTTGTggttaacacacacaaacatgttgtTTATTGAGGAGCAAGTTAAATAAAATCTTCTTTCCTCATATTTTTTAAACCATGA

Function

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48649 lncRNA upstream 24067 6578980 ~ 6581303 (+) True LOC120556885
XR_005638905.1 lncRNA upstream 24222 6578980 ~ 6581148 (+) False LOC120556885
TU48648 lncRNA upstream 31023 6574146 ~ 6574347 (+) True G36299
TU48637 lncRNA upstream 61296 6543467 ~ 6544074 (+) True G36288
TU48563 lncRNA upstream 172261 6429507 ~ 6433109 (+) True G36231
TU48723 lncRNA downstream 153521 6772736 ~ 6773170 (+) True G36353
TU48740 lncRNA downstream 328864 6948079 ~ 6951049 (+) True G36368
TU48741 lncRNA downstream 334237 6953452 ~ 6953907 (+) True G36369
TU48742 lncRNA downstream 336318 6955533 ~ 6955855 (+) True G36370
TU48783 lncRNA downstream 495234 7114449 ~ 7117220 (+) True G36408
XM_039796839.1 mRNA upstream 63939 6537541 ~ 6541431 (+) True si:dkey-178o16.4
XM_039796838.1 mRNA upstream 67946 6529451 ~ 6537424 (+) False trnt1
XM_039796837.1 mRNA upstream 67946 6529460 ~ 6537424 (+) True trnt1
XM_039796833.1 mRNA upstream 84209 6488472 ~ 6521161 (+) False LOC120556937
XM_039796368.1 mRNA downstream 16065 6635280 ~ 6638523 (+) True setmar
XM_039796658.1 mRNA downstream 29100 6648315 ~ 6753630 (+) True itpr1b
XM_039796664.1 mRNA downstream 29100 6648315 ~ 6753630 (+) False itpr1b
XM_039796667.1 mRNA downstream 29100 6648315 ~ 6753630 (+) False itpr1b
XM_039796663.1 mRNA downstream 29100 6648315 ~ 6753630 (+) False itpr1b
TU48489 other upstream 552601 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 680970 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1671206 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 1671206 4911700 ~ 4934164 (+) False cdk5rap1
TU48129 other upstream 2019895 4584239 ~ 4585475 (+) False G35921
TU48651 other downstream 16087 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 622994 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1608547 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1997783 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 2022815 8642030 ~ 8642101 (+) True trnae-cuc_5

Expression Profile