RNA id: XM_039799098.1


Basic Information

Item Value
RNA id XM_039799098.1
length 4434
RNA type mRNA
GC content 0.48
exon number 30
gene id timeless
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14638398 ~ 14650434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCTCGCTGTCTTGGCGCGAGACTTGTGAAATATCAGACTGAAAACAACCCTAATAACTGATGGAAAGCTATTAATTTTATACTCCAGCGGCTTCTGAACACGGAACCTGTCGAGGAACAGCGTTTAAACTATCTGGCAGTCTGATGGTGTGTGGACTTATTCAGGATGAATTGTGAGCTCTTGGCAACGTGCACTGCTCTCGGCTATCTGGAGGGAGACACCTATCACAAAGAAGCTGATTGCTtggAGAGTGTGAAAGACTTGATCAGGTATTTACGCCATGAAGATGACACTCGGGACGTCCGCCAGCAGCTGGGTGCAGGCCAGATTGTACAGAATGACCTTCTGCCCATTATCATCCAGCATGGACAAGACAAAGCCTTATTTGATGCCTGCATCAGGCTCATGGTCAACCTTACTCAGCCTGCAATGCTTTGCTTTGGTAAAGTCCCTGATGACCCAGTGTTTAGACATCACTTTTTGCAAGTGACGTCTCATTTACAAGCTTGTAAAGAGGCATTTGCCAGTGAAGCGGTGTTTGGCATTTTAAGTGAGACATTATACACGCTTCTACAACTGGACTGGGAgcagagacaggaggaggaTAACCTGCTGATAGAGAGGATCCTGCTGCTGGTCAGAAATGTGCTTCATGTACCTGCCGACCCATGTGAAGAGAAGAAAGTGGACGATGATGCCAGCATCCATGATAGGCTGCTGTGGGCCATTCACATGAGCGGTTTCGATGACCTGATCAAGTTCCTGGCGTCGGCCCAGAGTGAGCAGCAGTGGAGTATGCATGTGTTGGAAATAATCTCCCTGATGTTCAGAGACCAGACGCCGGAAGCTTTGGTGAGTGCCGGTCAGGCTCGTACAGCAGAAGAGAAGCACAGAGACACTCAGGAGCTGGAGGCACTGAGGGAGAAGGAGCTCGCAGCCAAACGCTCCCGCACATTACAAAGAGGAACCAGACACTCTCGCTTTGGAGGGTCCTATGTTGTTCAAGGCCTCAAGTCGATTGGGGACAAAGATGTGATTTATCACAGAAATGTTCATAATttcaaaaaCTATACTCATGACATGGGCAAAGCAGTGAGACGTGTTCCCAAGAGAAATCGACAGGCTCGGGAATGTAAGGACAAACGTCGCTCGGCCTTAAATGTTCGACTCTTCCTGCGAGAGTTTTGTGTGGACTTCTTGGAGAACTGCTACAATCGCCTCATGTACCTTGTTAAGGAAAGTCTAATTCGAGAGCAAAGTCAGCAACATGACGAGACGTACTACCTCTGGGCGCTCAGCTTTTTCATGGCCTTCAACCGTGGCAACGGTTTTCGTGCTGACTTAGTTTCTGAGACCATGTCCATCCGTGCTTTTCATTATATTGAGCGCAACATCACCAACTACTACGAGATGATGCTCACAGACCGCAAGGAGGCCACATCCTGGTCACGCAGGATGCACCTGGCACTAAAGGCATATCAGGAGCTGCTGCTAACTGTAAATGAGATGGACCGCTCACAGGATGAAAGCATCTGTCAGAGTAGCAGCGTAATTAAAAGCAACATATTTTACCTGATGGAATACAGGGAGATTTTCCTGACCCTACTGAGGAAGTATGATGAAACCAGACAGCCTCACTCCTACCTCAAAGACTTGGTGGAGTCAACACATCTCTTCTTGCGCATGTTAGAGCGCTACTGCAAAGGTCGCAATAGCTTGATGGTTCAGAAAAAGAGGGTGAAGCGAAAAAAGTCTCGAGGTCAAAAAAAGCCCTCAGCTGCAGAAACTAGTCCAGAGGCTTTGGCAGAGACCTGGAAGGTTGTGGAGGAAGAGCTGAAGGCTTCAGGGTTTCAGTTGTCAGAGTCTTTAACTGAAAGCATTGTGCCATTTGATGCCACATCTGACACTCCTCTTGAGGAGCAGCGCACTGACGCCATGGTGCGGGTGCAGGATGCCCTGCTGATTCGACTGGGACCAGAAGCACTGGGGCTGCTGCGTGCTGCCAGGGAGGTGTGGCCAGAGGGAGATGTGTTCGGTTCAGCTGATGTGGAACCTGAGGAGGAACTGGAACTCCTGAAGCAGATCCTGCATGCCAACCTGCCaaGGTCATCTCCTCCTGAGCCTGCCGCggaggaggatgatgatgcAGCAGAGTTAGAAGAGGAAGAGTTGCAGTCGGTCCAGGTTTTCGAAAAAGAGTTCAACTTTCTAGACTTTATCAAGAGGTTTTCCAACCCCAGTGTAGTGCGTCCATACCTCCTCTTATTAAAATCATACTCCAAAAACACACCTCACACAAACCACTGCATCGCTCGAATGCTGCATCGCTTGGCTGTCGACCTCAAAATGGACGCCCAGCTTTTCCAGCTGTCAGTCTTCAACCTTTTCAACAAGATCCTGAGTGACCCCGCTGCAGCTGCTTACAAGGAACTGGTGACCTTTGCCAAGTTTGTTCTGAACCGTTTCTTTTCACTGGCAGCACAAAACAACAAGGCATATGTTGAACTGCTGTTCTGGAAAAATGTGGGAGCCGTGCGTGAGATGACTGAAGGCTACAGCAAAGACGGagagggaaagaaaccAACATGGactgaagaggaggaagaggagttgCGCAACCTCTATGAGGAGCACCGTCATTCTGAAGCGCCAGATATAGTGGAGACTCTGCTGCCATTACTCAGCGACAGCACCCGCACTCGGCGCCAGGTAGTGACGCAGCTGGTGCATATGGGTCTGGTGGACAATGCTAAAGAACTGAAGAAACAGAAGAAAGGTACCCGGATTGTTCTTTGGactgaggagcaggaggaggagctgcagaTGCTCTACGAGGAGTACAAAGACTCTGATGATGTGCTGGGTAACATCATGAAGAAGCTCACAGCCAAGCGCTCCCGTGCGCGCGTGGTGGACAAGCTGCTCAGTATGGGCTTGGTGTCCGAGAGACGAGAGCTTTATAAGAAGAGGAGTCGCAGTGCTAAAGGGACGAGCTCTGGAAAAGGAATGACTGAAGACGAGTTCCTAGAAGGACTAACACAAGGGTTCACAGATGATCCTGGCGAcagagatgatgaagatgaggaagaggatgagtctgaagagagggaggaagaggaagaggaagagcaagAAAGGGAAACATCACAAAATGGAAGAAGGAGTAGCCAAAGCCTGCACTCCACAGTAGAGAGGAGACCTGATCTAGGCACCATGGTGTATGCTCTACAACAGGAAGgCATGTCTGAACCCTTGTTGTGGCTAAAGAATTGTCTAAACAGAACAGCAAATGACCGTCAACAAGATGGTTTCTCCCTGGATGTGCCACTTGTTCCTCTGAATGAGGCAAATGAAGAAGCCATGGACAACAAGAGCTTCCTGAGGCTGTTGCGCAAACTGGGAATTCGAGCACCTGCAAATGAACAGGAGAACTTCTGGAGGATTCCAGCAAAGATCAGTGTATCCCAGCTCCGGAGTGCAGCTGCGGCTCTCAGTCCAAGAGAGGAGGAACCTAAAGGAGGCGAGGAACAGGACAGCTCCAGAAGTCCAACTGGAGAATCCCAGGAGACAGAGGAGGTCTCAGGGGAACAGAGAGCTCAGGCTCTGAGAGCTCTGCTGCTCACACGCAAGAGGAAACACCACTCCTCGGAGCATACAGctCCTGTGTCAGATTTCACTCCTACTGAGGATACAGACGGTACACATGAGAGGTCCCAGGAGACGATCTCGACTAAAAGAAGCAGAGTGTTGgacgatgatgatgaggaggagaatGAGGATGACTCCACCACTGCAATGGATATGCAAACCAGCGTTGATGCCGATTCAGACAGAGAGGATATCTCTGCTCCTGTGAAGCGTAGGCGGAAGATGGTCTTAATTGATGAAGAGGACGATGAGGATTAGTGACTTTCTTTAATGGACTGTAAAAACTGCAGACAGGGGAGACATAAAAGGCCTTCTCTTTGCTCGTGGGGGGAATACAGCCCTCTGGAGGTCTGCAGTCCAGCCAGCGGAAACTCTATTAATGGAATACCAAACAACCCAAAGAAACAGGCCCTTAGACCGGCCCCTGTGGATACATAGATCCCATTAAGCAATTTCATTTTGTCATCTCTTTAGTAGGCTTGATTGGTGCCTTCATGTAGTGTAGGTAAATAAATAAGTTCTGACAGTCTTTTATTTAGTTAGTCGTTCTTTTTCTCTTAGCATTCTCAGCATGGATATCATACAGATGTTGCTGTATGAGAAAGATTTAGATCACATAATGTTGTCTATAACTTTTGATCTGATTGATTTGAATGGTTTCACTGTTTTGATAAAATTATAGCTGCATTTGTACTTTTTGGTCATTTCCATTGCTTTGGGTTTTAGAGTAAAATTAATTTCTACTTTAttcataatgataataataaaagcaCTGTTGTCAAAA

Function

GO:

id name namespace
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K03155 TIMELESS; timeless

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51611 lncRNA upstream 27976 14607839 ~ 14610422 (+) True G38441
TU51447 lncRNA upstream 143658 14492903 ~ 14494740 (+) True G38331
TU51433 lncRNA upstream 171714 14464974 ~ 14466684 (+) True G38317
TU51375 lncRNA upstream 329957 14305760 ~ 14308441 (+) True G38276
TU51373 lncRNA upstream 344241 14293933 ~ 14294157 (+) True G38274
TU51620 lncRNA downstream 38566 14689000 ~ 14690625 (+) True G38449
TU51683 lncRNA downstream 60292 14710726 ~ 14712134 (+) True G38496
TU51682 lncRNA downstream 62350 14712784 ~ 14714517 (+) True G38495
TU51699 lncRNA downstream 104849 14755283 ~ 14757358 (+) False cdk4
TU51717 lncRNA downstream 114863 14765297 ~ 14856007 (+) False znf740a
XM_039799140.1 mRNA upstream 958 14631878 ~ 14637440 (+) True prph
XM_039799128.1 mRNA upstream 12072 14619517 ~ 14626326 (+) True pmela
XM_039799040.1 mRNA upstream 35488 14599023 ~ 14602910 (+) True olfml3b
XM_039797291.1 mRNA upstream 54663 14574133 ~ 14583735 (+) False si:ch1073-456m8.1
XM_039797290.1 mRNA upstream 54663 14574134 ~ 14583735 (+) True si:ch1073-456m8.1
XM_039799141.1 mRNA downstream 2363 14652797 ~ 14668454 (+) True LOC120558200
XM_039799142.1 mRNA downstream 2363 14652797 ~ 14667573 (+) False LOC120558200
XM_039799143.1 mRNA downstream 2363 14652797 ~ 14667573 (+) False LOC120558200
XM_039796369.1 mRNA downstream 90175 14740609 ~ 14757359 (+) True cdk4
XM_039797384.1 mRNA downstream 107405 14757839 ~ 14777895 (+) False LOC120557243
TU51384 other upstream 300638 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 404873 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1110079 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 1270109 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1352087 13286239 ~ 13286311 (+) True trnar-acg_15
TU51738 other downstream 157918 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 214625 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 995077 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1314980 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1399471 16049905 ~ 16050430 (+) False eefsec

Expression Profile