RNA id: XM_039799107.1


Basic Information

Item Value
RNA id XM_039799107.1
length 1938
RNA type mRNA
GC content 0.42
exon number 5
gene id abhd14a
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18206629 ~ 18211949 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCATAATGTGCTCCGACGAGGAACAGACGACTGAAACAGTTTATTCATCCAAATTCCTATGCATCTCTCGAGTGACAGTTTCTATTCAGTTTTTACCTGCTTATTGGTCGGTCACTTTCTATCGAAGGAACGTTGAATGTAAAGGTAGTTTCTTGTCAGTAAAACGATGTCTCGCTTGCGTTAAGCTATTTCTCCTCTCAGTTTgaaaagctaacgttagctaccacCAGCATCGACCCGAAGCCTCTCTCTGCAACATTTCCCATCACTCGCAACCAGCAATGCAGAAGACATGACGATAAAGCAGACACCTTCATCCACCTGTCAGTGAACGTGTCCAACAATTACCTCCTCTGTGTTGTTCATCTTGACGAAATGAATTTCTTGCGTAATCGTCTTGTTGTTCTGGGCCTGGTGTTGTTGGCAACGGTACTGCTGTACCTGCTGCTGCCATCCATTCGCCAGGGCAGCATGGAGCCGTCCCTAGAAGCTCAAAGAATGGGGCTGATGGCCACCCCTCCTCTACCGCTTCCAACCATCAATGTGTCTATTCGCACCGGACAGCTTCCTGGGGATCCTCCACTGTTCTTCAGAGAAGCTTTACCCATTGATGGAGCTGGACGTCAGATATTGCCAAGGTTGCAAGTGGTCCTTCTGCATGGCCAGGCCTTCACGTCCAAAACCTGGGAAGAGCTTGGTACGATGGCCCTGCTGGCAACTAACGGATATCAGGCCTTAGCGATGGACCTTCCAGGGTATGGAAAATCACCGGACTCGGGGTCTTTGAAGACTGATCAGAATCGAGTGGACCTCCTTTCAAGGTTCATGGAGTCTTTGGGTGTCAGGGCAGCTGTGCTCTTAAGCCCCTCCATGAGTGGACATTACTCCATCCCCTTCCTCATGAAGAACAGCGCTCAGCTGCAAGGCTTCGTTTCCATAGCACCAGTCGGTACCCGGAGTTACACTCCACAGCAGTACCAAGATATTCAGattcccACTCTAATTGTGTTTGGATCCCTCGACACAAATCTGGGTGCCCAGTCCCACAAGAACCTCATACAACTTCCACATCACTTTGTACTTAAGTTAGAAGGAGCTCGCCATGCCTGCTACATGGACAAACCCAGAGAATTTCACCAAGGGTTGATCGACTTCCTCAGCAAACTGAAGTGAGATCTGTGGCAtaggaagaggaaaagaaagatgtAAACAatagaaagaagagaaaatagTCAGAAGAACACTAGTCCCCTCATCAATGGTTTAGTGTGGTGACAATTTTGCTAAAATGTTCTAAGATCTACATTATTCTCATGTTATCATAATCACCGCAAAGAACATTGGCATGAGAGTAGGTTTTTAATACATGGAACATGGCATGTAAAACATTGTAGTGACATTTACAATATGGTTCCAttataaaagtatttatttatacattttcaatAGTGTCACCCAAAAATACTAGTTCAGCTCAGCATGTTGTAAAATAGCTTCAGATTTGTAAAGTGGTGAGTTTTGTTTCATGTCTTTCTTTGCTTGTAAAAACATGGAATGTGTTTGCTTCACCGTTACCATTTGTGTAGGTGACATGTAGGTTGCTGTAAATATGCAAATGTAGCAGGTGCCTGTGTTGGAATAGCTTCTATTAGCTTCACATTTGACAAACAGATTTGTATATTAAGATCTGGTAACCATTCCAGTTTCCAAGAAAACATTTGCTCAACAAAAGCAAACAGAATTGATACacactgtaataaaataaaatgtagaatATGGActatatgaaataaaaataaaaagtagctcacatttacagtatgtaaatACTTATGATAAAGTTATATGTACTATATTTGCAATTAGTTTGGACAATCATGCAAAAAACTAACTTAGAATAAGAGATGTGCAtagcttaaaataaaaaataaaaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53269 lncRNA upstream 353263 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 420819 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 470723 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 477911 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 484281 17715412 ~ 17722348 (+) True G39633
TU53572 lncRNA downstream 236898 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 332206 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 358642 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 361733 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 362033 18573982 ~ 18574211 (+) True G39927
XM_039798894.1 mRNA upstream 5337 18196145 ~ 18201292 (+) False hyal2b
XM_039798896.1 mRNA upstream 5337 18196145 ~ 18201292 (+) False hyal2b
XM_039798895.1 mRNA upstream 5337 18196370 ~ 18201292 (+) True hyal2b
XM_039798908.1 mRNA upstream 11718 18189582 ~ 18194911 (+) False tusc2b
XM_039798324.1 mRNA downstream 3757 18215706 ~ 18226578 (+) True LOC120557740
XM_039798326.1 mRNA downstream 3887 18215836 ~ 18226578 (+) False LOC120557740
XM_039798327.1 mRNA downstream 3924 18215873 ~ 18226578 (+) False LOC120557740
XM_039798325.1 mRNA downstream 3942 18215891 ~ 18226578 (+) False LOC120557740
XM_039798291.1 mRNA downstream 19820 18231769 ~ 18286227 (+) True LOC120557727
TU53438 other upstream 12703 18189615 ~ 18193926 (+) False tusc2b
TU53439 other upstream 12703 18189615 ~ 18193926 (+) False tusc2b
XR_005638976.1 other upstream 279742 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 313209 17893293 ~ 17893420 (+) True LOC120558252
TU53107 other upstream 597413 17607930 ~ 17609216 (+) True G39581
XR_005639014.1 other downstream 3757 18215706 ~ 18226039 (+) False LOC120557740
TU54005 other downstream 1112880 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1405232 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other downstream 1405232 19617181 ~ 19632006 (+) False LOC120557344
TU54184 other downstream 1639599 19851548 ~ 19859341 (+) True cenps

Expression Profile