RNA id: XM_039799138.1


Basic Information

Item Value
RNA id XM_039799138.1
length 1980
RNA type mRNA
GC content 0.53
exon number 14
gene id mybphb
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26114854 ~ 26124738 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGGAATGTCGGCATTGGATCCAGTTTTAAGGTCGGACTTAACCGCGTTGGGAATTAGCTGCAGCCGTCAACATGCCGTCCAAGCCTGCCCCGATCAAGAAGGCGGCTAAGAAAGAACCAGccaagaaggaggaggagaaggctCCTGAGGCCGCTCCGGCCGAAGCCGCCCCAGCCCCCgctgaggctgctgctgctgctgcccctgCCGAGGGAGAGGCCCCCGCTGCCCCGCCAGCTGAGGAGCCCGCCCCTCCAGCCGCAGATGCTGCTGCCGCTccagctgcagaggaaggtgCTCCCGCTGCTGATGCCGAAGCGCCTGCTGATGGTGAAGCTCCTGCACCAGAAGAGCCTAAAGCGCCCACAcctccaccacccccacccaaaGAGCCCACAAGTGCCCCAGTGGATCTGTTTGTTGAGGATAAGAATGACACTTCAGTCTCCATCATTTGGAGCCAGCCAGAGGTCGTCGGCGATTCCGGTCTGGATGGATACACCATTGAAGTCTGCAAGGATGGAACTGAGGACTGGAAAGCAGTCAATGAGGATCTGCAGAAGTCCTGCCGCTACGTTATCAAGAACCAGGCCACCGGTGACCGTCTGAAGATCCGTGTGGTGGCTGTGAATGCTGGCGGCCGCAGCCCGCCTGTCGCCCTCCCCGAGGCTGTCCTGGTGAAGGAGGTCGCTAATCGTCCCAAGGTCCGCCTGCCACGTTTCCTCAGGCAGAGATACGTCGCTCAAGTTGGAGAGAAGATCAACCTGAGCATCCCCTTCACAGGTAAACCCAAACCTGTAGTCAGCTGGACAAAGGACGGGCAGCCCCTGGACACAAAGAGGGTGAACATCCGCAGCACTGACAGAGACAGCATCCTGTTTATCCGTACAGCCGAGAGAGAAGACTCTGGCGTGTATGAGATGTGTGTGAAGGTGGAGGACTTCGAAGACAAGGCTTCACTCATCCTTCAAATTGTTGAGCTGCCGGGGCCTCCCGCCACTGTGAAGATTGTGGATACCTGGGGCTTCAATGTTGCTCTGGAATGGACTGCACCCAAAGACAATGGAAACACAGAAATCACAGGTTACACAATCCAGAAAGCCGACAAAAAGACTGGAgACTGGTTCACTGTGTTGGATCATTACCACAGACTGAATGCCACTATCTCCGACCTCATCATGGGCAACGTCTACAAGTTCAGAGTGTTCGCTGAAAACAAGGTTGGAGTAAGCGAGAACGCTACCGTTGCAAAGGAGGAGGCCACAATCTTGAAGACAGCTATTGACTACAAGCCTCCTGAGTACAAGGAACGCGACTTTACCGAGGCGCCCAAGTTCACCACCTCTCTGAACGACAGAGCCACCACTGTCGGCTACAGCACCAAGCTGCTGTGCTCCGTCAGGGGATTCCCAAAACCCAAGGTTATATGGATGAAGAACCAGATGATTATTGGAGACGACCCCAAGTACAGGCAGGTTTGCGTCCAGGGAATCTGCACTCTGGAGATCCGTAAGCCTGGGAACTTTGACGGAGGGGTGTACACCTGCAAAGCCAAGAACACTCTCGGAGAAGCAGTGGTCAGCTGCAAGCTGGAGGTCAAACAACCAGTGGTTCCAGATGCAGAGAAGAAATAAGTCAACATTCAGGTCAGAAATGGGAGCAGAAGGAATGAGGTCTTTGCAGCATAAGGGAGGTGCTGGATTCCTGGAAGAACATGTATATATGGATGGTGACCACGCTACCCTGTGTTATGATGAACAATTGTTGTCGCTTCATGCCTTTATCGTTGACTCCATTATTAAGTCCATATCCGTGTCCACAATCAGCTTCCCAACGATACTGTCCATGATAACTAAATCATCTTGTCAGTCTAATTAGGGGTACACCAGGACTTCTACAGCAGGAATTTACTGTTCCTCATAGGGAACTACATGTAACATCTACGTGTTTatatcaataaataattttatttctggtt

Function

GO: NA

KEGG:

id description
K24494 MYBPH; myosin-binding protein H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56162 lncRNA upstream 87644 26026555 ~ 26027210 (+) True G41754
TU56139 lncRNA upstream 112103 26001481 ~ 26002751 (+) True G41746
XR_005638956.1 lncRNA upstream 191791 25921754 ~ 25923063 (+) True LOC120557323
TU56061 lncRNA upstream 207221 25906302 ~ 25907633 (+) False LOC120558088
TU56058 lncRNA upstream 227121 25885222 ~ 25887733 (+) True G41694
XR_005638967.1 lncRNA downstream 97339 26222077 ~ 26252094 (+) True LOC120557409
TU56254 lncRNA downstream 150384 26275122 ~ 26275929 (+) True G41827
TU56271 lncRNA downstream 200067 26324805 ~ 26338204 (+) True G41834
TU56272 lncRNA downstream 219399 26344137 ~ 26345459 (+) True G41835
XR_005639038.1 lncRNA downstream 275715 26400453 ~ 26404224 (+) False LOC120557964
XM_039798777.1 mRNA upstream 681 26033751 ~ 26114173 (+) False nav1b
XM_039798785.1 mRNA upstream 681 26035721 ~ 26114173 (+) False nav1b
XM_039798787.1 mRNA upstream 681 26035721 ~ 26114173 (+) False nav1b
XM_039798788.1 mRNA upstream 681 26035724 ~ 26114173 (+) False nav1b
XM_039798786.1 mRNA upstream 681 26035725 ~ 26114173 (+) False nav1b
XM_039798188.1 mRNA downstream 4856 26129594 ~ 26170085 (+) True LOC120557651
XM_039798190.1 mRNA downstream 4857 26129595 ~ 26170085 (+) False LOC120557651
XM_039798189.1 mRNA downstream 28295 26153033 ~ 26170085 (+) False LOC120557651
XM_039798417.1 mRNA downstream 406775 26531513 ~ 26540962 (+) True nudt3b
XM_039797964.1 mRNA downstream 426079 26550817 ~ 26585593 (+) True pacsin1b
TU55524 other upstream 2353903 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 2353903 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 4123055 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 5966164 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 6191305 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 143864 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 417769 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 417769 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 528522 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 3115675 29240413 ~ 29242253 (+) True G42449

Expression Profile