RNA id: XM_039799142.1


Basic Information

Item Value
RNA id XM_039799142.1
length 1607
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC120558200
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14652797 ~ 14668454 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTGACGAGACGACGCTGGATGGAGATAGGGAGGGGGGATTGCCTCGGagggaaaaaaactttttctccTTTGTTTTTTCAAGTGCCGTTTACTTCAGCGGCGAGAAAAGGAGAGGGGAGGTGTGTGATGGAGGATGGTTAAGATTTTCCAGAGAGAGGAGCTGGACTTGAAGTACTTTGGTGTGCTGCCACTGACGGGAACTCCAACGGTTAATTTAGATCCGAAGTtgggtgactgactgactgaggcGCCGCGGAGAATGGAAACTAGCCTCCTCACATCTGTGGTCACAGCTAGGTTCGCgttttaaaacatttgcatgAGGCCGGGATAGGAACCAAACGATGCCGTTGTTGGCGGTGTAGTGCAGTCCGTGTGTTTAAAAAGAGTTTAGGAAGAAAACCGGTTTTTCCCTGGTACTCTACCGccgctttttttttgttagtgaGTGGTGGTTGGCGTTTTTCCTGTTTGACAGGACCGATTGTCAGGGATAAGTTAACCTTACTGCGGAACGTACAGGCTCATCGTCACCAGACCTGCTCAGATGGACATGAGATAACGCCACCAAAAGTTCCACCCTTGTCCCAAACTCCAGCCTCTCACATTCACCCAGAATGGCAGATCCCACCGGGCTGAGCTCTGAAGGGGCCGGGGCAGGCACAGCCCTGGTCGACGCCTGTAGTTTGGAGATAGAGAGGAAGTATGACGTCATCCCTGCTGTCATCTGCTCCATGTGTTGCCTGTTTGGCATCATCTACTGCTTCTTTGGTTACCGCTGTTTCAAGGCTGTCATGTTCCTGTCTGGTCTGATGTTTGGCTCCGTCATCATTTTCTTGCTGTGTCACAAGGAGCACGTGCTGGACACCCAGCTGAGCGTGGAGGCCAGCGCAGGTATCGGCCTCGGTATCGGCCTGCTGTGCGGTCTGGTTACCATGTTGGTGCGAAGCGTCGGCCTCTTCATGACCGGCCTGCTGCTGGGCCTCCTCCTGGCTCTCGCCGCCCTGCTGGTCACTCACCAGTTCTACACCCCAACCACAGTCTGGGTCCCACTGGGTACACTTCTGGGAACGGGCATGCTGTTTGCTGTGCTGACGCTGCAGTGGCAAAAGCTCTTCACCATGCTCTCCACGGCTGTGTTCGGGGCAGCTATCATGACAGTGTGTGCTGATTACTTTGTGGAGATGCTGGTTTTGGCCATGCATGTATATGATTGCTTGCGCCTCACACCTGGGCCACCTCTCTGCTGGTACAGCTGGGTCATTCTGGGCGTCTGGCCCGCCCTCAGCCTCATAGGAGTACTGGTCCAGTGGAAACTGACAGATGACAGCTTCTCACACACTGAGGTCGTCATCAGCCGGAGACAGAAGAGAGTCCAGCTGATGCGGATTCGAGAGAAGGACGCCAAGAAGCGACCGCAGGCAGGTGGGCAGGAAGAGCTACCTGCAAAGTCTGCGGGACAGACAGATGGGCACAGGCACTTCCCTTAGCAGCCTAGGCACTGCCAACCACACCATGATCGACCTGGACTATGACACCGGGTCCACCGCGCCCCTTACAGCTACAACCCCAGTCGTCAGGGTCTGAGCGAAACGGAGATAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51611 lncRNA upstream 42375 14607839 ~ 14610422 (+) True G38441
TU51447 lncRNA upstream 158057 14492903 ~ 14494740 (+) True G38331
TU51433 lncRNA upstream 186113 14464974 ~ 14466684 (+) True G38317
TU51375 lncRNA upstream 344356 14305760 ~ 14308441 (+) True G38276
TU51373 lncRNA upstream 358640 14293933 ~ 14294157 (+) True G38274
TU51620 lncRNA downstream 21427 14689000 ~ 14690625 (+) True G38449
TU51683 lncRNA downstream 43153 14710726 ~ 14712134 (+) True G38496
TU51682 lncRNA downstream 45211 14712784 ~ 14714517 (+) True G38495
TU51699 lncRNA downstream 87710 14755283 ~ 14757358 (+) False cdk4
TU51717 lncRNA downstream 97724 14765297 ~ 14856007 (+) False znf740a
XM_039799098.1 mRNA upstream 2363 14638398 ~ 14650434 (+) True timeless
XM_039799140.1 mRNA upstream 15357 14631878 ~ 14637440 (+) True prph
XM_039799128.1 mRNA upstream 26471 14619517 ~ 14626326 (+) True pmela
XM_039799040.1 mRNA upstream 49887 14599023 ~ 14602910 (+) True olfml3b
XM_039797290.1 mRNA upstream 69062 14574134 ~ 14583735 (+) True si:ch1073-456m8.1
XM_039796369.1 mRNA downstream 73036 14740609 ~ 14757359 (+) True cdk4
XM_039797384.1 mRNA downstream 90266 14757839 ~ 14777895 (+) False LOC120557243
XM_039797383.1 mRNA downstream 90267 14757840 ~ 14777895 (+) True LOC120557243
XM_039796966.1 mRNA downstream 165788 14833361 ~ 14856782 (+) False znf740a
XM_039796972.1 mRNA downstream 165788 14833361 ~ 14856782 (+) False znf740a
TU51384 other upstream 315037 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 419272 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1124478 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 1284508 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1366486 13286239 ~ 13286311 (+) True trnar-acg_15
TU51738 other downstream 140779 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 197486 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 977938 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1297841 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1382332 16049905 ~ 16050430 (+) False eefsec

Expression Profile