RNA id: XM_039799169.1


Basic Information

Item Value
RNA id XM_039799169.1
length 980
RNA type mRNA
GC content 0.61
exon number 7
gene id snrpb
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 44620282 ~ 44625600 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTCCTTGTTTGGGTCGGATCGCTGCCGTACGTCACTTCCTGTGAATCTCTGATAAAGAAGAGCCTGGCGGCGGGAACTCCGCAGGTTAAATTTTTTGGGTTTGTTTGGTGAATCCGTCTGAATCGGAGCCATCAGAACCGCAAACATGACGGTGGGTAAGAGCAGTAAGATGCTGCAGCATATTGACTTCAGGATGAGGTGCATCCTGCAGGACGGCCGAATCTTCATCGGCACCTTCAAGGCCTTCGACAAACACATGAACCTCATCCTGTGTGACTGTGACGAGTTCAGGAAGATCAAGCCGAAGAACTCCAAGCAGCCGGAGCgagaggagaagagggttctAGGTCTCGTTCTGCTGCGGGGGGAGAACCTGGTCTCCATGACGGTCGAGGGCCCGCCCCCTAAAGATaCGGGAATAGCTCGCGTCCCATTGGCCGGTGTGGCCGGAGGTCCCGGTGTGGGCCGTGCGGCTGGTCGTGGTGTCCCGGCCGGTGCTCCGATGCCTCAGGCCCCGGCCGGACTCGCCGGCCCCGTGAGAGGAGTAGGCGGGCCATCGCAGCAGgtgatGACTCCGCAGGGCAGAGGGACGGTTGCTGCGGCAGCAGCCGGAGCCAGCATCGCCGGCGCTCCCACCCAGTACCCTCCGGGACGCGGAGCCCCGCCCCCGATGGGCCGGGGAGCCCCACCCCCAGGTATGATGGGCCCGCCTCCCGGCATGCGCCCACCAATGGGTCCTCCGATGGGGATGCCTCCGGGCAGAGGAGCCCCGATGGGGATGCCTCCCCCAGGCATGAGGCCGCCTCCGCCCGGCATGAGAGGACCACCTCCTCCCGGGATGAGACCGCCCCCCCGGCCCTGAGGAAGTCCCTGCCCCCTCACACTCACCTGCTGTAtagatatttcttttttttttggttttttttaaaatcttgtttgttttttaataaagtTTCTCCAGGATGGTTTAAATTctg

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11086 SNRPB, SMB; small nuclear ribonucleoprotein B and B'

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61095 lncRNA upstream 151291 44400478 ~ 44468991 (+) False G45635
TU61094 lncRNA upstream 217107 44400446 ~ 44403175 (+) False G45635
TU61088 lncRNA upstream 217107 44400478 ~ 44403175 (+) True G45635
TU61098 lncRNA upstream 230081 44361162 ~ 44390201 (+) True G45636
TU61362 lncRNA downstream 88573 44714173 ~ 44714690 (+) True G45831
TU61348 lncRNA downstream 116675 44742275 ~ 44744790 (+) False LOC120557302
TU61402 lncRNA downstream 181110 44806710 ~ 44807403 (+) True G45863
TU61415 lncRNA downstream 197928 44823528 ~ 44824784 (+) True G45873
XR_005638908.1 lncRNA downstream 214462 44840062 ~ 44841232 (+) True LOC120556889
XM_039798856.1 mRNA upstream 39339 44576958 ~ 44580943 (+) True ube2c
XM_039798855.1 mRNA upstream 44703 44568861 ~ 44575579 (+) True LOC120558028
XM_039797928.1 mRNA upstream 53881 44546034 ~ 44566401 (+) True pcif1
XM_039797932.1 mRNA upstream 75053 44533407 ~ 44545229 (+) True zgc:77375
XM_039797933.1 mRNA upstream 86973 44527371 ~ 44533309 (+) True isy1
XM_039798361.1 mRNA downstream 21730 44647330 ~ 44664201 (+) True ctsa
XM_039798363.1 mRNA downstream 44989 44670589 ~ 44708952 (+) True ralgapb
XM_039798362.1 mRNA downstream 44989 44670589 ~ 44708726 (+) False ralgapb
XM_039798366.1 mRNA downstream 44989 44670589 ~ 44708726 (+) False ralgapb
XM_039798368.1 mRNA downstream 44989 44670589 ~ 44708726 (+) False ralgapb
TU61241 other upstream 120986 44495576 ~ 44499296 (+) False tsen2
TU61239 other upstream 125563 44488999 ~ 44494719 (+) False tsen2
TU61117 other upstream 212833 44403903 ~ 44407449 (+) True G45647
TU61091 other upstream 258914 44360786 ~ 44361368 (+) False G45635
TU61017 other upstream 663109 43956827 ~ 43957173 (+) True G45577
TU61350 other downstream 99207 44724807 ~ 44742195 (+) True LOC120557302

Expression Profile