RNA id: XM_039799171.1


Basic Information

Item Value
RNA id XM_039799171.1
length 2331
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC120558214
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9967082 ~ 9995755 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTCCGGTTGGAGTCGGAATCAGAGCCGAGAGCCACGCGCGACAGACGCATCAACCGGTCTTGGCTTGCGGTTTGAGATTGTTTACATTCAATCAAACAAGTAAGAAAGAAAGTAGGCTAGCCTGCTGCTGAAATGGACACCTCTGATCAGCTTGCCTCTGTGGGGACGTTTCAAGTGCTAAAATTACCTCTGGGATTTATCCGTGTTTTGGAATGGCTCTTTGCCATTTTTGCATTTGCGACATGTGGGGGCTACTCTGGGCAGCTGCGGGTTAGTGTGGACTGCATGGAGAAGGCCCTAAGCAACCTCAGCATTGGCATCGACTTTGCTTATCCTTTCAGGTTGCACCAGGTGTCCTTTGAAGCGCCCGTGTGTGAGGGTATTAGGAGGGAACGCGTTTTCCTTATTGGAGACTATTCATCCTCTGCAGAGTTCTTCGTCACCATTGCGGTCTTTGCCTTCCTGTATTCCCTCATGGCGACCATTGTCTACATCTTCTTTCAGAACAAGTACCGTGAAAACAACCGAGGACCACTCATTGACTTTGTAGTGACTGTGGTGTTCTCCTTCATGTGGCTGGTCAGTTCTTCTGCCTGGGCCAAGGCTTTGTCTGAGGTGAAAATGGCCACTGATCCAGATGAGGTGCAGCTCCTTATCTCTGCCTGCAAAGTCCAGACCAACAAGTGTGGCTCTCTGCATGGACCACGCTGGTCCGGACTCAACACCTCAGTGGTTTTTGGGTTTCTCAACTTTGTTCTATGGGCTGGGAACATCTGGTTTGTCTTTAAGGAGACCGGTTGGCACAAGGGCGCTACAAGGTTAGCAGGCGGGGCATCTGAGAAACAGTCCAACACCTTTAACCAGCAGTGCTACAACCAGGGAAGCTTCGACCAGTCAGGGAGCTACAACACCCAGGGAAACCTCGGACAGCCATCTGAGTACAGCCAGGTGGGAGGGCCCACCTCCTACTCCAATCAAATGTAGCCGTGCCTTTTTCGATTCGTGAGTGGCACTTCTGCATTTTAAACAAAGGCAATCAGGGGGTtatcagagagagaaaaaaatatggTCATAAAATAAGGCATCAAAGGTGTCAAGTACACTCACTTTAGATACAAGTATTGTTTGGTATTGTACAAAATTATTAGATATAGTCTTTTACTCCTTCTCTGTCAGAGGTGTTGTTTGCTGAATGTTGTATTTCTTGTAGTTTGAAACTCGTAAGTGAtcgcctctctctctgtgcttgGTAATGGACATTCACTGTTACGACTGGATGTCTTTTTCAAACTGGTTTGCACTGTTTTGGAAGGAAAAAGTGCTCTatgtttgtatacatttttgtttcaaaaatgGGGTCGACTCAGTGCATGATGTCTTACTGTACACGTGCTAATATGCTCTCTGTGAAACTAGTAAAGTAAACAGTTTATCTCTCAAAGTTTACAAAGATCACATGCCCCCGAATCATTACTGAAAGTTTATTTAGATCCCTATTATAACATGTATAttcttttttctaatctaaCTGGAACTGTATTTTGATATTGGGTGTTTCTTATTTAGATACATATTCAGAATTAGTGACATTTCTGTTTAATTTGTTAGAATAAATAGATTCCAACTCATGTCTGACATTGATCATGTCAGAAAGTCTAAACACTTAATTtacaaaaaactgtaaactgcaaaaaaaacactatacaGGAATTGTGTAAGACAAAAGTAATGTATATGCAACCACTGCAGTATGATTATGTTCCCATGGTTTCCACTTCTTAGTTGCATCTGTACAGACAACATCACTGCCGTTTCATATTTATGATGTAAAGAGGAAGATGTTCTCCCAAATTGTTTACAAGTGGCCGATCCTGTTGCAAattgctatgactgttttctaTGAACCTAAGTTATACCTCTCTAAAGCATGCCCAGAGTATTCTTTTACACTGCTAAAGCCCAGTAAAAAAGGCACATCAGTACCACAGTGACAATAGGGCTCATAACTAATATTGAGTTTTTGACTTTAAAATCCCAATTCAGTCTTCAGTCAAAAACTGCAATTTATGTATAGTAATATTCAAAGGATAATTCCCGTTTGCTGTTTGATATGACTTGTGCAACCCTGTTTCTTGACCTCCAGCATGTGACTTGCATCAGTATAATGAAGCAGATTGAACatccatgtacagtatgtatcatAGTTTGACATCCATGATAAATGTGTACGGGTCCATATACTGCCACATGCATTTAGTTCATGAGTGTGGATATTTTACAGGCATTCATCCTAATAAAGATGCACAAATTTGCGCATAAACGATCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49800 lncRNA downstream 79666 9886362 ~ 9887416 (-) True G37125
TU49756 lncRNA downstream 84051 9880039 ~ 9883031 (-) True G37093
TU49727 lncRNA downstream 233704 9731681 ~ 9733378 (-) True G37073
TU49602 lncRNA downstream 736126 9230470 ~ 9230956 (-) True G37008
TU49601 lncRNA downstream 736683 9230061 ~ 9230399 (-) True G37007
TU49834 lncRNA upstream 17972 10013727 ~ 10015053 (-) True G37145
TU49836 lncRNA upstream 19624 10015379 ~ 10016724 (-) True G37146
TU49849 lncRNA upstream 46492 10042247 ~ 10043822 (-) True G37158
TU49850 lncRNA upstream 48413 10044168 ~ 10044435 (-) True G37159
TU49856 lncRNA upstream 64049 10059804 ~ 10060407 (-) True G37165
XM_039799204.1 mRNA downstream 4539 9960248 ~ 9962543 (-) True LOC120558233
XM_039799206.1 mRNA downstream 4552 9957831 ~ 9962530 (-) False LOC120558233
XM_039799205.1 mRNA downstream 5397 9960248 ~ 9961685 (-) False LOC120558233
XM_039798556.1 mRNA downstream 9710 9935855 ~ 9957372 (-) False LOC120557887
XM_039798554.1 mRNA downstream 9724 9950010 ~ 9957358 (-) True LOC120557886
XM_039796489.1 mRNA upstream 3241 9998996 ~ 10006173 (-) False LOC120556768
XM_039796490.1 mRNA upstream 3241 9998996 ~ 10006173 (-) True LOC120556768
XM_039796491.1 mRNA upstream 11575 10007330 ~ 10013719 (-) True zbtb49
XM_039796492.1 mRNA upstream 11575 10007330 ~ 10013617 (-) False zbtb49
XM_039797560.1 mRNA upstream 105974 10101729 ~ 10201751 (-) False slc2a9l2
TU49655 other downstream 571512 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 933415 8907782 ~ 9033667 (-) True LOC120558079
XR_005639053.1 other downstream 933423 8906439 ~ 9033659 (-) False LOC120558079
XR_005638890.1 other upstream 3242 9998997 ~ 10006173 (-) False LOC120556768
XR_005639075.1 other upstream 496535 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 498448 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 539199 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 936654 10932409 ~ 10943628 (-) False fam219aa

Expression Profile