RNA id: XM_039799172.1


Basic Information

Item Value
RNA id XM_039799172.1
length 2192
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120558214
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9967082 ~ 9995755 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTCAGCAGTACTCAAGTAGGATTCAGTACTGGATTAGATCCTCTCGTCTCCAATGTGTATGGTTATATTTGCTCCGCTCTTTGCCATTTTTGCATTTGCGACATGTGGGGGCTACTCTGGGCAGCTGCGGGTTAGTGTGGACTGCATGGAGAAGGCCCTAAGCAACCTCAGCATTGGCATCGACTTTGCTTATCCTTTCAGGTTGCACCAGGTGTCCTTTGAAGCGCCCGTGTGTGAGGGTATTAGGAGGGAACGCGTTTTCCTTATTGGAGACTATTCATCCTCTGCAGAGTTCTTCGTCACCATTGCGGTCTTTGCCTTCCTGTATTCCCTCATGGCGACCATTGTCTACATCTTCTTTCAGAACAAGTACCGTGAAAACAACCGAGGACCACTCATTGACTTTGTAGTGACTGTGGTGTTCTCCTTCATGTGGCTGGTCAGTTCTTCTGCCTGGGCCAAGGCTTTGTCTGAGGTGAAAATGGCCACTGATCCAGATGAGGTGCAGCTCCTTATCTCTGCCTGCAAAGTCCAGACCAACAAGTGTGGCTCTCTGCATGGACCACGCTGGTCCGGACTCAACACCTCAGTGGTTTTTGGGTTTCTCAACTTTGTTCTATGGGCTGGGAACATCTGGTTTGTCTTTAAGGAGACCGGTTGGCACAAGGGCGCTACAAGGTTAGCAGGCGGGGCATCTGAGAAACAGTCCAACACCTTTAACCAGCAGTGCTACAACCAGGGAAGCTTCGACCAGTCAGGGAGCTACAACACCCAGGGAAACCTCGGACAGCCATCTGAGTACAGCCAGGTGGGAGGGCCCACCTCCTACTCCAATCAAATGTAGCCGTGCCTTTTTCGATTCGTGAGTGGCACTTCTGCATTTTAAACAAAGGCAATCAGGGGGTtatcagagagagaaaaaaatatggTCATAAAATAAGGCATCAAAGGTGTCAAGTACACTCACTTTAGATACAAGTATTGTTTGGTATTGTACAAAATTATTAGATATAGTCTTTTACTCCTTCTCTGTCAGAGGTGTTGTTTGCTGAATGTTGTATTTCTTGTAGTTTGAAACTCGTAAGTGAtcgcctctctctctgtgcttgGTAATGGACATTCACTGTTACGACTGGATGTCTTTTTCAAACTGGTTTGCACTGTTTTGGAAGGAAAAAGTGCTCTatgtttgtatacatttttgtttcaaaaatgGGGTCGACTCAGTGCATGATGTCTTACTGTACACGTGCTAATATGCTCTCTGTGAAACTAGTAAAGTAAACAGTTTATCTCTCAAAGTTTACAAAGATCACATGCCCCCGAATCATTACTGAAAGTTTATTTAGATCCCTATTATAACATGTATAttcttttttctaatctaaCTGGAACTGTATTTTGATATTGGGTGTTTCTTATTTAGATACATATTCAGAATTAGTGACATTTCTGTTTAATTTGTTAGAATAAATAGATTCCAACTCATGTCTGACATTGATCATGTCAGAAAGTCTAAACACTTAATTtacaaaaaactgtaaactgcaaaaaaaacactatacaGGAATTGTGTAAGACAAAAGTAATGTATATGCAACCACTGCAGTATGATTATGTTCCCATGGTTTCCACTTCTTAGTTGCATCTGTACAGACAACATCACTGCCGTTTCATATTTATGATGTAAAGAGGAAGATGTTCTCCCAAATTGTTTACAAGTGGCCGATCCTGTTGCAAattgctatgactgttttctaTGAACCTAAGTTATACCTCTCTAAAGCATGCCCAGAGTATTCTTTTACACTGCTAAAGCCCAGTAAAAAAGGCACATCAGTACCACAGTGACAATAGGGCTCATAACTAATATTGAGTTTTTGACTTTAAAATCCCAATTCAGTCTTCAGTCAAAAACTGCAATTTATGTATAGTAATATTCAAAGGATAATTCCCGTTTGCTGTTTGATATGACTTGTGCAACCCTGTTTCTTGACCTCCAGCATGTGACTTGCATCAGTATAATGAAGCAGATTGAACatccatgtacagtatgtatcatAGTTTGACATCCATGATAAATGTGTACGGGTCCATATACTGCCACATGCATTTAGTTCATGAGTGTGGATATTTTACAGGCATTCATCCTAATAAAGATGCACAAATTTGCGCATAAACGATCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49800 lncRNA downstream 79666 9886362 ~ 9887416 (-) True G37125
TU49756 lncRNA downstream 84051 9880039 ~ 9883031 (-) True G37093
TU49727 lncRNA downstream 233704 9731681 ~ 9733378 (-) True G37073
TU49602 lncRNA downstream 736126 9230470 ~ 9230956 (-) True G37008
TU49601 lncRNA downstream 736683 9230061 ~ 9230399 (-) True G37007
TU49825 lncRNA upstream 17219 9991689 ~ 10029489 (-) True G37142
TU49834 lncRNA upstream 39257 10013727 ~ 10015053 (-) True G37145
TU49836 lncRNA upstream 40909 10015379 ~ 10016724 (-) True G37146
TU49849 lncRNA upstream 67777 10042247 ~ 10043822 (-) True G37158
TU49850 lncRNA upstream 69698 10044168 ~ 10044435 (-) True G37159
XM_039799204.1 mRNA downstream 4539 9960248 ~ 9962543 (-) True LOC120558233
XM_039799206.1 mRNA downstream 4552 9957831 ~ 9962530 (-) False LOC120558233
XM_039799205.1 mRNA downstream 5397 9960248 ~ 9961685 (-) False LOC120558233
XM_039798556.1 mRNA downstream 9710 9935855 ~ 9957372 (-) False LOC120557887
XM_039796489.1 mRNA upstream 24526 9998996 ~ 10006173 (-) False LOC120556768
XM_039796490.1 mRNA upstream 24526 9998996 ~ 10006173 (-) True LOC120556768
XM_039796491.1 mRNA upstream 32860 10007330 ~ 10013719 (-) True zbtb49
XM_039796492.1 mRNA upstream 32860 10007330 ~ 10013617 (-) False zbtb49
XM_039797560.1 mRNA upstream 127259 10101729 ~ 10201751 (-) False slc2a9l2
TU49655 other downstream 571512 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 933415 8907782 ~ 9033667 (-) True LOC120558079
XR_005639053.1 other downstream 933423 8906439 ~ 9033659 (-) False LOC120558079
XR_005638890.1 other upstream 24527 9998997 ~ 10006173 (-) False LOC120556768
XR_005639075.1 other upstream 517820 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 519733 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 560484 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 957939 10932409 ~ 10943628 (-) False fam219aa

Expression Profile