RNA id: XM_039799181.1


Basic Information

Item Value
RNA id XM_039799181.1
length 2864
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120558220
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 37951640 ~ 37956976 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagaagaagaagaagaagaagaagaagaagaagaagaaggttcCGACTTCTTTCCTGTTCTCCGGTTAGCTGTCCccctgaaaatgaaaatgcctACACTCCAGTTACTGAGAACGTACGTCAACCAGCGCCTGACTGTGGCTGTTGAAGATATAATCGAGATGTTTGAAAGAACCATAACCGAGTACGAGGAGGAAATGTATCGCCAGCGCAGGCTGCTGGGAGCTGAGCAGTCCGGCGGCGGCGCCGCCAAGACAGTGTTCAGCAACCAAACAGGTGTGTCTCAGGAAATCCAGCCGCTGGTTATCAATCCAAAGGTTCCCCCTGAACAGCAGGAGTGGGGCCCTGGTCCGGACCCGGAGGAGCCCCCGGAGCCCCcgcacattaaagaggaaccaGAGGAGGTCTGGATCAGACAGGGGCTTCAGCGGCTGGAGGGGGCTGACATCCCAGAGTTCCAGTTCCCTGCAGTGTCTGTAAAACGTGAAGACGATGACGAGAAACCTCACTCCGCAGTGCTCCATCAAAGGCAAACGGAGGAGCCCAGAGAGGCAGACCCTCCAGCTCAGCAGACAGGAGCCGGGGCCGCCGTCCGCAACTGTGACGCGTCAGAAGCGGCCTTTGACTTGGACGCGGCCGTTTTTTTAAAAGCGGCGAGCGACGGCCAGTTTTTCCTCTCGCAGTGTTTTGAAACTGAGACCGAAGCCTCGGACGACGGCTGGAAGCACGCGATCGAGCCTCAGCCGCCCTGCGACCCGCTGAAAGACAGCGAAGCCGCGTCTCCTCCGAGAGCTCACGGTCAGGGGGAAGTCTATAAATGCCCGGCGTGTAGCAAAACCTTTAAGCACCACACGGATCTGCAGAGGCACGTCACAAGCCACACAGGGGAGAGGCCGTTTGACTGTGCCGAGTGTGGCAAGACGTTCCGGCACAAGGGAAGTTTGCACATACACAtgaggaaacacacaggagagaagccttttCGTTGCCTAGTTTGCGGAAAGAACTTCACCCAGAGCGGAACGTTGGCCGCGCACGTGAGGATTCACACCGGAGAgaagcctttcagctgctcgGTGTGTAACAAAAGGTACAATGAGAGAGGGACACTGGCGCGACACATGAGGGTCCACACCGGAGAGAAGCCGTTCACGTGCTCGCTGTGCGGTAAACGATTCAGCGAGAAGGGCAATCTGACTAAACACAAGAGACTCCACACGGGGGAGAAACCGTTCAGTTGCCGTGCATGTGAGAAGAATTTTAGTTTGCTGTCGCACCTCCGAAACCACAAATGTCCCGGTGAGAAGAGCGGTGGAACTGTAGAGCAGCCGCTTCAGCTGAAATCGTAGACCGTCAAGtgattttaagaaaaaaaaagaatgtaattCTTTGAATGCTTTGTGATTTACAGTTGTTTCACTCCCAGAGTTTCCGCGGGGTCTTCAAAAAGTCTAAAAACTTCAAAGTCAAAATGTTAGGCCTTTTTAAAAGGTCGTATATTCACTGACGTGTTGTGTTTTATGCCTTAAATAATTTTGAACtcgtcttaattttcctacgtccatgtaacgctacctcctaatgctcattgaaatgctACCGCagcactttttaatttttttattccgtggtgttgtagttctttcctTCACTAGTCCAAAAATGATCCCATGTATTTCattacaaatgagaccaacacgCAACTTGTGATGTTGACTTATTTTGTCAGCTTTCGTGTTATCGGCGCGAGTCTCCTGGGGATTGTACCACAGACTCATTTCAGACGTTTCCATAATATAGGTCTTGAATTTCATTCGTAATGGTCTAAAAAAGGcttaaatttgactttgtgAAACctgcaaccctgtctcctagcCTTTAATccctaatcacacacacacatgcgcgacTGCAATCggctaacttgttgctctcgCCACCAAATATAACGTTTCACACAATATAaggctttttcctcgccatcgCGATATCAACCGCTGCAGTAAACGCATGGCGAAAGGCTTGCGACCTATCGGGAAAGACACTCCGAAATTTTGTGTAAATTGAAAGCAATTATCAGCAGAAAacaaactgcactttaaaaagtAAATGCTCCTtcttttagtggtgccttttttttttttttttttatatatattcaaTTGAACCCTATCTGTGAATTGTATTTTGATGACCGACGGTTTTAATACAAGTGCTTGTTTTGAAGAAACAACTCGCACAGCCCAAAAATTCTAATGTGCAGGCGCGTTGGAAAATATCAGCAACTTAACGCACTCTGCCCTTTACTCTTCACcgtttgtttacaaaaaaattgTTTCGGTCCCTCCGCACCTTCGTCAAGAGTCTGACTCTTAAACAGGAGAGTCAGACCGAGATAAAGAACAGACACGTGAGAGACaaattaacattaaaataaagggGCAGCGTTAAATAGTGAAACCATTAAATAATCAGTGTATAATAATCAGAAAATGTGCCTTTATGatgtgtactgtacatgtgtatgGTCCCCTTGTGCGATGCCATTGTGCCTGAACACATCCTGTGTGGACACAGATGGACGactgctgctgcttctctgCTAGCACGCTGCTAATGCTACGCCTGCTGTGTACACGTGGTGCAGGCTAACCCGccggctgtagcttcataaCCATATCCATTAAGCCTCCCtttttcttatgttaaacagctattttgtatatatttgtcactgtatttattgtttgtttttttcctatgaatgtttaatatgtctgttttgtttgtgtgtgcaccaaccaccaaggcaaagTCCTTGTAACGGTAACTTACTTTAGCAATAAACCTGATTCTGATAAAGA

Function

GO: NA

KEGG:

id description
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59326 lncRNA upstream 1863 37949515 ~ 37949777 (+) True G44265
XR_005638909.1 lncRNA upstream 119021 37764777 ~ 37832619 (+) True LOC120556894
TU59308 lncRNA upstream 200328 37751067 ~ 37751312 (+) True G44247
TU59290 lncRNA upstream 649124 37302224 ~ 37302516 (+) True G44232
TU59236 lncRNA upstream 1240510 36705467 ~ 36711130 (+) False fezf2
TU59333 lncRNA downstream 125665 38082641 ~ 38096072 (+) False plekha6
TU59401 lncRNA downstream 202961 38159937 ~ 38160694 (+) True G44325
TU59403 lncRNA downstream 216626 38173602 ~ 38174107 (+) False LOC120557027
XR_005638935.1 lncRNA downstream 270603 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA downstream 270606 38227582 ~ 38228350 (+) False LOC120557056
XM_039799117.1 mRNA upstream 216323 37312062 ~ 37735317 (+) True fhit
XM_039799130.1 mRNA upstream 1240345 36703255 ~ 36711295 (+) True fezf2
XM_039796735.1 mRNA upstream 1275385 36431405 ~ 36676255 (+) True cadpsa
XM_039796336.1 mRNA downstream 3730 37960706 ~ 38096026 (+) True plekha6
XM_039796337.1 mRNA downstream 6790 37963766 ~ 38096026 (+) False plekha6
XM_039796328.1 mRNA downstream 53648 38010624 ~ 38096026 (+) False plekha6
XM_039796331.1 mRNA downstream 53648 38010624 ~ 38096026 (+) False plekha6
XM_039796335.1 mRNA downstream 53648 38010624 ~ 38096026 (+) False plekha6
unassigned_transcript_220 other upstream 1989030 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2285599 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2465405 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2511501 35439977 ~ 35440139 (+) True LOC120558245
TU58591 other upstream 3284458 34665236 ~ 34667182 (+) False G43656
TU59402 other downstream 209206 38166182 ~ 38167218 (+) False LOC120557027
TU59524 other downstream 655661 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 943596 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 996142 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1856984 39813960 ~ 39821908 (+) False G44581

Expression Profile