RNA id: XR_005638894.1


Basic Information

Item Value
RNA id XR_005638894.1
length 2652
lncRNA type inter_gene
GC content 0.43
exon number 8
gene id LOC120556826
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 22776241 ~ 22824156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTGCCTCTGTTGTTGCCCGGGTGATGTTGGGGACTGACATGAACCGCGTTAACCAGTCCTGTTTATCCAAGATTATTTTCACTGAACATGGACCAATGCCTCACACAAGAACCGCCTGCTTACTGCTGCTGAGCTTTAAGAGGAACCTTAATTGCAACAAAGGGCACTAATGACTGAAAGGATATTATCCTAAGATGGTTCCGCACCGACCCTCCGTCTTCTTCTATTTTGATGTGATTTCCAGAGAGGACATGTGAATACCAGCTAAAGGCAGAGACACAGTGGACTGATGCTGCCCTGAGAGAACCAATGGATCCTGCGAGCAGCAGGGGCCAAAAAACAAGATGCAGATGAGCTTTGTGTACATCACCAGTGGCAGATCAGCTATCATATACACATGGTCCCTTGGGGAAGAAAGGCATAATACCTTTAAGTGACAGACAAGTGTCATATCAACATCAGACTGAAGGGAGGGATAAACATCTATACATCTATTTTCAGGCATCATTTGAGATGTGAAGTGCTGACGTCAGGTGGTCTTCGCTAATACATTCAGGCGTGCTGTTGTTTGAGTAGCCAGACAAACATGCTCATGCAAAGaCCCCAACCTCAACCTTTTTGATGAACTAGGCTGACCAGTTGCAGTCAGCCTGGGCTTGAACCACCAATGCTAACTTGAGAGTGAAGAGGcgagaggctgcagcaccaaGGGGAGGCCAGAGGTGAAAGAGGGCGGAAGAGAAATACAACGAAGACACGAAACGGCAAGGCACAGTGCTGCTGATGCAGAGGCTTCTCTGTTTACACCTTGGACTTCACCTACTATTGAGGACACAAAGGTCATGCCCCTCTtcttcctttgtgtgtgtgtgtgtgtgtgtgtgtgtttttgtgtgtttgtgtgtgcttacATTTTACTTTACATTTGCACACAAAGACGAACTTAGTTTAAAAGTGTGATGGATGGTATTTTTCACGTTTTAAGGCAAATCTTGGAGCATATGTACAGCTTCAATACCAAATAATTGCATCTTAAAATTATGCCGATGTTTAAACTAGGACAACAACAATCCATCTGTATCTATAGGTATACAGATTTTGAAATTTGAGGTATCGGAATCAGTGTCAAGAGATGCTGCATTCCTAGTTTAAACCTATAAAGACATCCGTAATAGCTCAcaataaacacatacagtatgcaaaTTTGTTTTTGGCTTTGAGATGGACTAGATTTACTCTCGACTACAGTTCAACCTACGATACTTTTGACCTGGTCTGGAAATTTGAATACACATTTTTGCAattgacttggacttgactgAGGTCTTGACTCGTAAACAAGTGTGAACGTTATTGTACActtgaataataaaaaaggttTCTTTGCATATGTGAGCTGATGTTAGGGAATGCTGTTGGTCGTCATAAATTTATTGGAACTGTCCGCTGCCTGTGTGTCCAGGCAAGAGGAATACAGTCTCCCACAGTCTGCTCGGTCTAAAGGACGAACAGCAGGGTCCATTTCTCAGAGATGTGGGTGGCCGGCTGCTTGCTCACTCATCAATATCATGCAAGTATGTTGCTGTGACCTGCCATGCGTGTCCCCTCAGCTTAGATCAATAACACGAACAGATTGCACACCCCCCTCTAAACCCCCATCCACACCTCCACTCTCTGAGGGATTCGTATGTGCCTTTTCAACATCATTATCATATATCCCCTCTTTGAAAGGGCAGTGTCAGCTAGATTGGAACACTACAGAAATTCAATTGACAGGATAAGCTCTATGAGATACAACAGGATAGATAGTAGTTTAGTGTAACTGATAATGAACCAATCACATGATACGTCTgagtggattttctttttcaaaatctttttttttctaatttgttCATTTGAAAAGTTACCTGATACTATTGTGATACATTTATGGGATAAGACAGGCTCTTGTCTTACACGGCAACactacaaaaacagaaaaaataaaagcaaaaaccAAGACACAGGAAGTCTAGGTGGAAAAGAGGACACGTGGGATGAAGGGGGAAGAGAaaagggaggaaggagaggtgTTCACCTTGAGAGTGCTCATCCATTACAGGAAGGCTGAGGCTCACTCTGTCACACTGTCACAGTGATGCCACCTCCACACCACCCAAAAGGTCACCTCACACTTCACTGCACTGcttcaaacacaaaatacacacccacacacaccccattTCTGCATTTACAAAAACACAGGTGGACACACTCCCATCTGTCGCCCTATCACTGACAAGTGATAGGGCCGCtgccacacagacacaaataaacacacatactgtatgcatacAGCTAGTGTATGTGTGAAAGGAAGATAATGCACCACAAGTCACTTTTAAACAAAAACTGATAATGCCGTTTTGCATGGGACTACTCTTTCTGTGGATCTAGAGTGTGAAAATGCATTCATAGTTTGCCCACAAAAACTTACCTACATccctgtagttttttttatagtgCTACCTTATTTACTGTAATCAAACCTAGTTGTGAAAGGTTTTGTGCTGTTTTGCATTCAGCATGTTTGTTGTTAGTaaagcagtccctccagaaaaacgtgattatgcgatcgcataattcaatgcataatcagccaaagtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55223 lncRNA upstream 180296 22595427 ~ 22596515 (+) True G41041
TU55222 lncRNA upstream 183728 22591672 ~ 22593083 (+) True G41040
TU55200 lncRNA upstream 221966 22554617 ~ 22554845 (+) True G41021
TU55086 lncRNA upstream 351690 22389178 ~ 22425121 (+) True G40948
XR_005638962.1 lncRNA upstream 478999 22294954 ~ 22297812 (+) True LOC120557379
TU55299 lncRNA downstream 133972 22958128 ~ 22964132 (+) True G41092
TU55313 lncRNA downstream 187326 23011482 ~ 23018265 (+) True G41099
TU55331 lncRNA downstream 335130 23159286 ~ 23161818 (+) True G41112
TU55334 lncRNA downstream 339373 23163529 ~ 23172306 (+) True G41114
TU55343 lncRNA downstream 390002 23214158 ~ 23215795 (+) True G41118
XM_039798723.1 mRNA upstream 6779 22761471 ~ 22770032 (+) True LOC120557968
XM_039797417.1 mRNA upstream 23298 22676522 ~ 22753513 (+) False LOC120557262
XM_039796538.1 mRNA downstream 35898 22860054 ~ 22906187 (+) True LOC120556810
XM_039798335.1 mRNA downstream 85280 22909436 ~ 22935567 (+) True shmt2
XM_039796502.1 mRNA downstream 282662 23106818 ~ 23126652 (+) True LOC120556778
XM_039799096.1 mRNA downstream 324919 23149075 ~ 23153670 (+) True slc32a1
XM_039798337.1 mRNA downstream 358293 23182449 ~ 23213859 (+) True LOC120557748
XR_005638988.1 other upstream 785012 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 2628121 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 2853262 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 2917470 19851548 ~ 19859341 (+) True cenps
XR_005638958.1 other upstream 3144805 19617181 ~ 19632006 (+) False LOC120557344
TU55524 other downstream 924754 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 933602 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 3444446 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 3718351 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 3718351 26542507 ~ 26548799 (+) False G41850

Expression Profile