RNA id: XR_005639001.1


Basic Information

Item Value
RNA id XR_005639001.1
length 323
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC120557694
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 39203669 ~ 39205218 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attgatttttttatttactgcaTGGATTGGAATCATTGTTGCTTCAgcagtttttgttgttgatgttaTTCTTCAAGTTAGGCGTCTAGACAATAAAGAAGGATCACAAGACCCAGGAAACCCACCTAGGGAACAGCTTGAAAAGCTCAACCAGATGACCGTAAAGGCCTGATGACAATGATCACAGATAAATCTGCATGGAGGGAACTTCTCCAATCTCCGTGTCTTCGTGGACTCCTCGTCTGACAATTTCTTCTGTACTGAGGCCGCTGTGAGGTCTCATGCAGTCAGCAAGGAAATTACTTTACTTTCAGTTTCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639003.1 lncRNA upstream 103173 39099985 ~ 39100496 (+) True LOC120557696
TU59600 lncRNA upstream 215136 38988068 ~ 38988533 (+) True G44499
TU59589 lncRNA upstream 362436 38841034 ~ 38841233 (+) True G44489
TU59588 lncRNA upstream 378650 38824675 ~ 38825019 (+) True G44488
XR_005638998.1 lncRNA upstream 390225 38806446 ~ 38813444 (+) True LOC120557691
TU59633 lncRNA downstream 293881 39499099 ~ 39865513 (+) True G44527
XR_005639000.1 lncRNA downstream 403503 39608721 ~ 39610204 (+) True LOC120557693
XR_005638997.1 lncRNA downstream 439537 39644755 ~ 39646595 (+) False LOC120557690
TU59649 lncRNA downstream 439857 39645075 ~ 39646601 (+) True LOC120557690
XR_005638996.1 lncRNA downstream 439863 39645081 ~ 39646595 (+) False LOC120557690
XM_039798239.1 mRNA upstream 61319 39122788 ~ 39142350 (+) True LOC120557683
XM_039798217.1 mRNA upstream 223556 38953118 ~ 38980113 (+) False LOC120557670
XM_039798216.1 mRNA upstream 223557 38953118 ~ 38980112 (+) False LOC120557670
XM_039798231.1 mRNA upstream 255819 38945407 ~ 38947850 (+) True LOC120557678
XM_039797149.1 mRNA upstream 260852 38941572 ~ 38942817 (+) True LOC120557116
XM_039798211.1 mRNA downstream 43948 39249166 ~ 39276979 (+) True LOC120557665
XM_039797151.1 mRNA downstream 89419 39294637 ~ 39313682 (+) True LOC120557118
XM_039798233.1 mRNA downstream 541955 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA downstream 541955 39747173 ~ 39774250 (+) False LOC120557680
XM_039797157.1 mRNA downstream 585793 39791011 ~ 40446646 (+) True LOC120557124
XR_005638992.1 other upstream 221936 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 300613 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 590698 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 1036451 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 3241059 35962539 ~ 35962610 (+) True trnac-gca_18
TU59701 other downstream 608742 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 950990 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 1275458 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 1299134 40504352 ~ 40506056 (+) False LOC120557692
XR_005638993.1 other downstream 1314724 40519942 ~ 40541231 (+) False LOC120557674

Expression Profile