RNA id: XR_005639002.1


Basic Information

Item Value
RNA id XR_005639002.1
length 890
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC120557695
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 39740987 ~ 39743350 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGAGTCTCCCACTGGATGGAAGATTGCTTTTGCAGTTGTTAGTTCTATTCTTGGTCTTGCTGTTGTTTTGTCATCAAAAAAATTCGGGAAAGAGataaatGATCACAAGACCCAGGAAACTCATCTAGGGAACAGCTTAAAAACCCTAACCTGATGACCTGAGAGGCCTGATGACAAAGATCACAGATAAATCTGCATGGAGGGAACTTCTCCAATCTCCGTGTCTTCGTGGACTCCTCGTCTGACAATTTCTTCTGTACTGAGGCCGCTGTGAGGTCTCACGCAGTCAGCAAGGAAATGACTTTACTTTCAGTTTCATAAATAGGACCTATAAACTGCATCAGCATTGTCACTTAATTTTAAAGGGGACATATAATGAAAATCTCTCATTTTCAGTCATGGTGCACAAACATGAGTAGGCTATCTGGAGGGCCGACCAACCCAAAACCTGAAATAAAACAACCCAGCCAGTTCTTTGTGGGCATCCTCAATCTGATGTAATTCAACAAGCCATTCAGATTCAGCTCCTCTTCCTATGTCAAATGCAGGCTCATTAGAATATACTGCTCCTCATCtccaccatggatgtattataagatatTTCCATTTCGTCACCcgttatccaatctgtccgtTCATATCGGCTGCGATCATGAGCGGAGCGGTCGCACCAGCCCGAGCACTGCAGCGGACGTTTACATTACAATCATGTTGTGCTTCTTTTTATTTCTCAAGTTGCTAAGCCAGAGTTTGTCAGGTTGAACTAGACACTGTTGTTGGCTGTGATATCAGAATTGTGCctctacagtatgttttatCTGATTAACTCTCAGGGCATCCTGTGATTTCATTTCTATCTAAATAAAAGATGAAATATGTCAAACTGTA

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638995.1 lncRNA upstream 85249 39653321 ~ 39655738 (+) True LOC120557689
TU59657 lncRNA upstream 87071 39653278 ~ 39653916 (+) False LOC120557689
TU59649 lncRNA upstream 94386 39645075 ~ 39646601 (+) True LOC120557690
XR_005638997.1 lncRNA upstream 94392 39644755 ~ 39646595 (+) False LOC120557690
XR_005638996.1 lncRNA upstream 94392 39645081 ~ 39646595 (+) False LOC120557690
TU59691 lncRNA downstream 3835 39747185 ~ 39753186 (+) False LOC120557680
TU59677 lncRNA downstream 31263 39774613 ~ 40227520 (+) True G44562
TU59700 lncRNA downstream 73257 39816607 ~ 39817498 (+) True G44581
TU59705 lncRNA downstream 101831 39845181 ~ 39847645 (+) True G44585
TU59711 lncRNA downstream 155219 39898569 ~ 39900323 (+) True G44590
XM_039797151.1 mRNA upstream 427305 39294637 ~ 39313682 (+) True LOC120557118
XM_039798211.1 mRNA upstream 464008 39249166 ~ 39276979 (+) True LOC120557665
XM_039798239.1 mRNA upstream 598637 39122788 ~ 39142350 (+) True LOC120557683
XM_039798217.1 mRNA upstream 760874 38953118 ~ 38980113 (+) False LOC120557670
XM_039798233.1 mRNA downstream 3823 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA downstream 3823 39747173 ~ 39774250 (+) False LOC120557680
XM_039797157.1 mRNA downstream 47661 39791011 ~ 40446646 (+) True LOC120557124
XM_039798212.1 mRNA downstream 412869 40156219 ~ 40431341 (+) True LOC120557666
XM_039798224.1 mRNA downstream 776592 40519942 ~ 40541231 (+) False LOC120557674
XR_005638992.1 other upstream 759254 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 837931 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 1128016 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 1573769 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 3778377 35962539 ~ 35962610 (+) True trnac-gca_18
TU59701 other downstream 70610 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 412858 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 737326 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 761002 40504352 ~ 40506056 (+) False LOC120557692
XR_005638993.1 other downstream 776592 40519942 ~ 40541231 (+) False LOC120557674

Expression Profile